DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017948
GeneRnf40
Synonyms
Desc.ring finger protein 40
LocusNM_172281 chr7:134732212-134747119(+)
DB links


Entrez 233900
MGI 2142048
Ensembl ENSMUSG00000030816
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018476
(v2.0)
Rnf40NM_172281233900
25.089875.7345106.27681.770351.788320.605816.1878126.85948.153720.5052
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017948
(v1.0)
Rnf40233900
Minor ZGA0.91618
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018476
(v2.0)
Rnf40233900
849/5060.2334467/506-0.2314230/5062.4356785/5061.959522/506-2.4135151/506-2.3324
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018476
(v2.0)
Rnf40233900
393/1880.5486184/188-0.1464169/1883.3656507/1882.74628/188-2.358550/188-2.4747
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018476
(v2.0)
Rnf40233900
133.218922260.01
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018476
(v2.0)
Rnf40233900
43.953113033.81
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017948
(v1.0)
Rnf40NM_172281233900
78.739374.102160.846935.880111.4426
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017948
(v1.0)
Rnf40NM_172281233900
292.927306.368274.95191.70340.1441
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017948
(v1.0)
Rnf40NM_172281233900
82.32929.1756180.847
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017948
(v1.0)
Rnf40NM_172281233900
80.361473.35893.9703
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017948
(v1.0)
Rnf40NM_172281233900
317.025342.69
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017948
(v1.0)
Rnf40NM_172281233900
82.3779.04993103.063
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017948
(v1.0)
Rnf40NM_172281233900
56.334734.643633.3509
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017948
(v1.0)
Rnf40NM_172281233900
164.018170.028
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017948
(v1.0)
Rnf40NM_172281233900
21.54066.02623
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017948
(v1.0)
Rnf40NM_172281233900
1.960691.17572
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017948
(v1.0)
3875C0904C01-3Mm.41122LOC233900233900
U008809NAP120778-001TC841810,TC841809U,F,23.76013.88043.57533.83953.64063.55293.6428
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017948
(v1.0)
1438191_a_atMm.41122Rnf40NM_172281.2233900
731.9596.6635.7523.55515.325
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017948
(v1.0)
A_51_P236013Rnf40NM_172281233900
11P0.750.214P
Proteome N/A