DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017952
GeneRnf5
Synonyms
Desc.ring finger protein 5
LocusNM_019403 chr17:34738044-34740506(-)
DB links


Entrez 54197
MGI 1860076
Ensembl ENSMUSG00000015478
Vega OTTMUSG00000037075
Featureprotein-coding
GO(BP)
  •   4 Terms
      cellular protein catabolic process (GO:0044257)
      protein K63-linked ubiquitination (GO:0070534)
      protein K48-linked ubiquitination (GO:0070936)
      ER-associated misfolded protein catabolic process (GO:0071712)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Protein processing in endoplasmic reticulum (mmu04141)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018480
(v2.0)
Rnf5NM_01940354197
40.187826.691977.44154.776059.6191351.99924.57377.398910.129555.368
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017952
(v1.0)
Rnf554197
Minor ZGA0.95786
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018480
(v2.0)
Rnf554197
858/5710.0745422/571-0.55131120/5714.5442644/5713.536612/571-3.4096170/571-2.337
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018480
(v2.0)
Rnf554197
272/202-0.0831145/202-0.5909664/2025.23591549/2024.25333/202-3.629953/202-2.4961
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018480
(v2.0)
Rnf554197
102.09424641.5
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018480
(v2.0)
Rnf554197
23.691511221.15
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017952
(v1.0)
Rnf5NM_01940354197
27.753753.72053.547486.6749517.549
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017952
(v1.0)
Rnf5NM_01940354197
405.081888.9639.8636108.528198.351
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017952
(v1.0)
Rnf5NM_01940354197
29.01914.697158.6102
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017952
(v1.0)
Rnf5NM_01940354197
28.325553.181157.356
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017952
(v1.0)
Rnf5NM_01940354197
64.960554.6953
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017952
(v1.0)
Rnf5NM_01940354197
29.035914.495862.9061
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017952
(v1.0)
Rnf5NM_01940354197
3.284416.444936.99001
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017952
(v1.0)
Rnf5NM_01940354197
4.764815.90533
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017952
(v1.0)
Rnf5NM_01940354197
40.87068.4433
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017952
(v1.0)
Rnf5NM_01940354197
4.6605414.2479
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017952
(v1.0)
5483H3001C04-3Mm.7447Rnf554197
U037716NAP003888-001Rnf5;TC842981,TC842979O35445U,F3.8473.86883.90393.8473.78583.99194.0055
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017952
(v1.0)
1422888_atMm.274542Rnf5NM_019403.354197
203.875322.600336.8
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017952
(v1.0)
A_52_P282035Rnf5NM_01940354197
11P0.01960.0166P
Proteome N/A