DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017953
GeneRnf6
Synonyms
Desc.ring finger protein (C3H2C3 type) 6
LocusNM_001256086 chr5:147020770-147032547(-)
NM_001256085 chr5:147020770-147032547(-)
NM_028774 chr5:147020770-147033033(-)
NM_001256087 chr5:147020770-147032477(-)
DB links


Entrez 74132
MGI 1921382
Ensembl ENSMUSG00000029634
Vega OTTMUSG00000031090
Featureprotein-coding
GO(BP)
  •   9 Terms
      regulation of transcription, DNA-dependent (GO:0006355)
      ubiquitin-dependent protein catabolic process (GO:0006511)
      protein ubiquitination (GO:0016567)
      negative regulation of axon extension (GO:0030517)
      protein K27-linked ubiquitination (GO:0044314)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      regulation of androgen receptor signaling pathway (GO:0060765)
      protein K48-linked ubiquitination (GO:0070936)
      protein K6-linked ubiquitination (GO:0085020)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018481
(v2.0)
Rnf6NM_001256085,NM_001256086,NM_001256087,NM_02877474132
13.646611.648812.6995166.48474.221711.749455.60118.8572263.483710.4616
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017953
(v1.0)
Rnf674132
2-Cell Transient0.99758
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018481
(v2.0)
Rnf674132
562/3500.1699389/3500.036195/3501.6856257/3500.88121/350-1.9511117/350-2.1658
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018481
(v2.0)
Rnf674132
281/1590.307173/1590.005591/1592.7056240/1591.90864/159-2.970525/159-3.1925
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018481
(v2.0)
Rnf674132
49.052411443.03
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018481
(v2.0)
Rnf674132
13.67987119.27
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017953
(v1.0)
Rnf6NM_02877474132
11.57158.27781117.14148.819737.5384
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017953
(v1.0)
Rnf6FR171293,NM_02877474132
24.187323.406197.897112.82459.5471
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017953
(v1.0)
Rnf6NM_02877474132
12.09914.8769.03127
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017953
(v1.0)
Rnf6NM_02877474132
11.80998.194696.18518
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017953
(v1.0)
Rnf6NM_02877474132
90.319109.69
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017953
(v1.0)
Rnf6NM_02877474132
12.10614.809226.78369
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017953
(v1.0)
Rnf6NM_02877474132
108.45447.137341.543
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017953
(v1.0)
Rnf6FR171293,NM_02877474132
111.914105.066
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017953
(v1.0)
Rnf6NM_02877474132
5.3548743.3524
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017953
(v1.0)
Rnf6NM_02877474132
4.564472.44173
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017953
(v1.0)
5845H3009H11-3Mm.266961200013I08Rik74132
U026954NAP094558-0011200013I08Rik;TC853291,TC853286Q9DBU5U,F,23.45083.37333.80394.20943.50543.7163.7621
0017953
(v1.0)
22099L0941C11-3Mm.266961200013I08Rik74132
U026954NAP094558-0011200013I08Rik;TC853286Q9DBU5U,F,22.78922.96993.38133.82722.54992.79492.6304
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017953
(v1.0)
1427898_atMm.26696Rnf6NM_028774.274132
47.646.6476.5115.9568.475
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017953
(v1.0)
A_51_P228808Rnf6NM_02877474132
11P0.5160.196P
0017953
(v1.0)
A_52_P367440Rnf6NM_02877474132
11P0.9330.654P
Proteome N/A