DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017963
GeneRnpc3
Synonyms
Desc.RNA-binding region (RNP1, RRM) containing 3
LocusNM_026043 chr3:113307985-113333067(-)
NM_001038696 chr3:113307985-113333067(-)
DB links


Entrez 67225
MGI 1914475
Ensembl ENSMUSG00000027981
Vega OTTMUSG00000022379
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018491
(v2.0)
Rnpc3NM_001038696,NM_001287015,NM_02604367225
3.188118.224876.0966833.794531.79535.014836.925684.1871135.57855.25026
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017963
(v1.0)
Rnpc367225
Major ZGA0.99938
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018491
(v2.0)
Rnpc367225
509/2960.2684446/2960.4739100/2961.9919250/2961.081252/296-0.4439269/296-0.7341
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018491
(v2.0)
Rnpc367225
216/1230.2974172/1230.364997/1233.1375238/1232.260414/123-1.025960/123-1.6107
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018491
(v2.0)
Rnpc367225
25.38428529.86
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018491
(v2.0)
Rnpc367225
7.71536711.52
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017963
(v1.0)
Rnpc3NM_001038696,NM_02604367225
8.548624.2134425.155322.03284.87592
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017963
(v1.0)
Rnpc3FR139593,FR164297,FR293387,NM_001038696,NM_001110505,NM_007446,NM_02604367225
192.93385.6889176.40456.906486.2918
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017963
(v1.0)
Rnpc3NM_001038696,NM_02604367225
8.938371.16594.59695
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017963
(v1.0)
Rnpc3NM_001038696,NM_02604367225
8.724744.171133.11468
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017963
(v1.0)
Rnpc3FR139593,FR164297,FR293387,NM_001038696,NM_001110505,NM_007446,NM_02604367225
127.01772.2676
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017963
(v1.0)
Rnpc3NM_001038696,NM_02604367225
8.943571.149933.41608
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017963
(v1.0)
Rnpc3NM_001038696,NM_02604367225
23.289921.273624.5461
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017963
(v1.0)
Rnpc3FR139593,FR164297,FR293387,NM_001038696,NM_001110505,NM_007446,NM_02604367225
103.579144.653
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017963
(v1.0)
Rnpc3NM_001038696,NM_02604367225
2.8557221.6716
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017963
(v1.0)
Rnpc3NM_001038696,NM_02604367225
1.132682.04551
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017963
(v1.0)
17442K0621A05-3Mm.581042810441O16Rik67225
U024555NAP035856-12810441O16Rik;TC859606Q91YJ1U,F,22.98892.94823.15413.20323.07443.07783.0458
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017963
(v1.0)
1424589_s_atMm.316928Rnpc3NM_001038696.1,NM_026043.367225
87.22519.8252.454035.45
0017963
(v1.0)
1437461_s_atMm.316928Rnpc3NM_001038696.1,NM_026043.367225
364.27562.8251307.3263.975168.6
0017963
(v1.0)
1429504_atMm.316928Rnpc3NM_001038696.1,NM_026043.367225
0048.4500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017963
(v1.0)
A_52_P385615Rnpc3NM_02604367225
11P0.7470.236P
Proteome N/A