DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017992
GeneRpa1
Synonyms70kDa
RF-A
RP-A
Rpa
Desc.replication protein A1
LocusNM_026653 chr11:75113761-75161885(-)
NM_001164223 chr11:75113761-75161885(-)
DB links


Entrez 68275
MGI 1915525
Ensembl ENSMUSG00000000751
Vega OTTMUSG00000006199
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018519
(v2.0)
Rpa1NM_001164223,NM_02665368275
17.873166.125354.06895.557847.6613974.764267.637355.80988.6061380.2721
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017992
(v1.0)
Rpa168275
Maternal RNA0.9978
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018519
(v2.0)
Rpa168275
561/3490.1715403/3490.0911116/3491.975257/3490.885114/349-2.4995120/349-2.1256
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018519
(v2.0)
Rpa168275
279/1560.324179/1560.0817113/1563.0405245/1561.96537/156-2.265641/156-2.4841
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018519
(v2.0)
Rpa168275
56.244811947.26
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018519
(v2.0)
Rpa168275
15.00087320.55
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017992
(v1.0)
Rpa1NM_001164223,NM_02665368275
68.718837.47774.143485.3025648.0928
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017992
(v1.0)
Rpa1NM_001164223,NM_02665368275
429.472151.64427.335145.7154253.91
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017992
(v1.0)
Rpa1NM_001164223,NM_02665368275
71.85186.5363740.889
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017992
(v1.0)
Rpa1NM_001164223,NM_02665368275
70.134537.101441.3623
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017992
(v1.0)
Rpa1NM_001164223,NM_02665368275
177.838340.26
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017992
(v1.0)
Rpa1NM_001164223,NM_02665368275
71.89366.4468545.3647
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017992
(v1.0)
Rpa1NM_001164223,NM_02665368275
3.836215.119835.97275
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017992
(v1.0)
Rpa1NM_001164223,NM_02665368275
28.480224.3079
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017992
(v1.0)
Rpa1NM_001164223,NM_02665368275
10.26094.73035
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017992
(v1.0)
Rpa1NM_001164223,NM_02665368275
36.121519.6837
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017992
(v1.0)
4919G0114G12-3Mm.180734Rpa168275
U033076NAP005831-001Rpa1;TC847049Q9D2C8U,F,24.08064.10933.23513.20092.96423.31183.3261
0017992
(v1.0)
8113H3060A04-3Mm.180734Rpa168275
U033076NAP056608-1Rpa1;TC847051Q9D2C8U,F,23.35323.19163.14333.20333.36473.23763.2909
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017992
(v1.0)
1437309_a_atMm.180734Rpa1NM_001164223.1,NM_026653.268275
4393.054194.7889.275651.652336.625
0017992
(v1.0)
1423293_atMm.180734Rpa1NM_001164223.1,NM_026653.268275
891.625664.475169.95157.025440.45
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017992
(v1.0)
A_51_P333159Rpa1NM_02665368275
11P0.8260.306P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017992
(v1.0)
Rpa168275
642642