DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017994
GeneRpa3
Synonyms14kDa
Desc.replication protein A3
LocusNM_026632 chr6:8205936-8209141(-)
DB links


Entrez 68240
MGI 1915490
Ensembl ENSMUSG00000012483
Vega OTTMUSG00000029297
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018521
(v2.0)
Rpa3NM_02663268240
10.307958.947113.56322.765924.89632.5690535.845774.324635.17393.397
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017994
(v1.0)
Rpa368240
Minor ZGA0.99043
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018521
(v2.0)
Rpa368240
617/3350.3673464/3350.3528153/3352.4285296/3351.146833/335-1.2606149/335-1.7579
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018521
(v2.0)
Rpa368240
347/1560.6373220/1560.3776148/1563.4268285/1562.182711/156-1.680764/156-1.8602
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018521
(v2.0)
Rpa368240
49.587210945.49
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018521
(v2.0)
Rpa368240
12.35637017.65
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017994
(v1.0)
Rpa3NM_02663268240
61.280978.297516.948917.235725.6646
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017994
(v1.0)
Rpa3NM_02663268240
61.338561.32614.996116.530123.5489
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017994
(v1.0)
Rpa3NM_02663268240
64.07483.769785.4243
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017994
(v1.0)
Rpa3NM_02663268240
62.543477.511355.1438
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017994
(v1.0)
Rpa3NM_02663268240
62.288849.8863
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017994
(v1.0)
Rpa3NM_02663268240
64.1123.7180760.4799
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017994
(v1.0)
Rpa3NM_02663268240
15.692116.641724.47
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017994
(v1.0)
Rpa3NM_02663268240
16.351819.8355
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017994
(v1.0)
Rpa3NM_02663268240
15.30487.19252
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017994
(v1.0)
Rpa3NM_02663268240
13.219337.8243
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017994
(v1.0)
14641J0733E04-3Mm.29073C330026P08Rik68240
U027037NAP005521-001TC869934Q9CQ71U,F,23.60563.6453.11492.87823.17253.04393.2766
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017994
(v1.0)
1448938_atMm.29073Rpa3NM_026632.468240
407.825781.375205.975203.75345.5
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017994
(v1.0)
A_51_P438057Rpa3NM_02663268240
11P1.1260.445P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017994
(v1.0)
Rpa368240
221371