DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018007
GeneRph3al
SynonymsLOC385671
Noc2
Desc.rabphilin 3A-like (without C2 domains)
LocusNM_029548 chr11:75645660-75724528(-)
DB links


Entrez 380714
MGI 1923492
Ensembl ENSMUSG00000020847
Vega OTTMUSG00000006223
Featureprotein-coding
GO(BP)
  •   6 Terms
      intracellular protein transport (GO:0006886)
      exocytosis (GO:0006887)
      regulation of calcium ion-dependent exocytosis (GO:0017158)
      glucose homeostasis (GO:0042593)
      negative regulation of G-protein coupled receptor protein signaling pathway (GO:0045744)
      positive regulation of protein secretion (GO:0050714)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018534
(v2.0)
Rph3alNM_001291159,NM_029548380714
1.65592106.244159.81610.37014.18151.003650.700635233.4128.185020.605939
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018007
(v1.0)
Rph3al380714
Minor ZGA0.99856
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018534
(v2.0)
Rph3al380714
743/644-0.306425/644-0.714420/644-1.364561/644-2.051165/644-1.238519/644-0.9087
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018534
(v2.0)
Rph3al380714
306/255-0.2487161/255-0.77564/255-2.138428/255-1.819325/255-1.2595168/255-1.1941
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018534
(v2.0)
Rph3al380714
121.228212894.71
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018534
(v2.0)
Rph3al380714
42.19774398.13
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018007
(v1.0)
Rph3alNM_029548380714
88.0308124.91111.14533.728240.265277
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018007
(v1.0)
Rph3alNM_029548380714
355.024414.72633.168513.87391.54966
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018007
(v1.0)
Rph3alNM_029548380714
92.04430.701049136.28
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018007
(v1.0)
Rph3alNM_029548380714
89.8443123.656204.366
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018007
(v1.0)
Rph3alNM_029548380714
648.8841127.97
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018007
(v1.0)
Rph3alNM_029548380714
92.09780.691447224.141
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018007
(v1.0)
Rph3alNM_029548380714
10.31883.599767.1738
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018007
(v1.0)
Rph3alNM_029548380714
11.062724.2283
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018007
(v1.0)
Rph3alNM_029548380714
14.12161.85674
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018007
(v1.0)
Rph3alNM_029548380714
5.747932.81749
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018007
(v1.0)
1431695_atMm.425697Rph3alNM_029548.3380714
2009.71120.325000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018007
(v1.0)
A_52_P396401Rph3alNM_029548380714
11P0.2490.0675P
Proteome N/A