DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018048
GeneRpl39
Synonyms
Desc.ribosomal protein L39
LocusNM_026055 chrX:34622515-34625179(-)
DB links


Entrez 67248
MGI 1914498
Ensembl ENSMUSG00000079641
Vega OTTMUSG00000017100
Featureprotein-coding
GO(BP)
GO(MF)
  •   1 Terms
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018576
(v2.0)
Rpl39NM_02605567248
3031.36223.83135.3281398.185586.343897.992854.6916.52454898.814227.89
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018048
(v1.0)
Rpl3967248
MGA0.96955
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018576
(v2.0)
Rpl3967248
295/219-0.0826189/219-0.327184/2192.1579325/2191.88875/219-3.159263/219-2.3691
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018576
(v2.0)
Rpl3967248
140/960.0312103/96-0.014583/963.2367309/962.98512/96-3.003526/96-2.4171
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018576
(v2.0)
Rpl3967248
49.386812738.89
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018576
(v2.0)
Rpl3967248
12.68714.48
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018048
(v1.0)
Rpl39NM_02605567248
232.45424.22321038.023864.122009.88
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018048
(v1.0)
Rpl39NM_02605567248
8.143560.55130215.427534.120423.561
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018048
(v1.0)
Rpl39NM_02605567248
243.0521108.626.428
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018048
(v1.0)
Rpl39NM_02605567248
237.24323.979912.2154
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018048
(v1.0)
Rpl39NM_02605567248
0.452340.402738
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018048
(v1.0)
Rpl39NM_02605567248
243.1931093.4113.3974
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018048
(v1.0)
Rpl39NM_02605567248
961.0483730.963393.03
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018048
(v1.0)
Rpl39NM_02605567248
33.750439.9566
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018048
(v1.0)
Rpl39NM_02605567248
10.48951250.85
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018048
(v1.0)
Rpl39NM_02605567248
02.81771
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018048
(v1.0)
530C0115D01-3Mm.304782810465O16Rik67248
2810465O16Rik3.06283.05873.05433.23523.18883.24893.2088
0018048
(v1.0)
13061H3157F03-3Mm.304782810465O16Rik67248
U039317NAP094569-001TC924715,TC924711U,F,23.29763.24883.44413.38413.5213.59283.7172
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018048
(v1.0)
1450840_a_atMm.30478Rpl39NM_026055.167248
5202.575509.655097.77512734.96697.55
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018048
(v1.0)
A_51_P139244Rpl39NM_02605567248
11P0.5630.109P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018048
(v1.0)
Rpl3967248
121231