DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018074
GeneRprd1a
Synonyms
Desc.regulation of nuclear pre-mRNA domain containing 1A
LocusNM_144861 chr18:24643463-24688705(-)
DB links


Entrez 225283
MGI 2385066
Ensembl ENSMUSG00000040446
Featureprotein-coding
GO(BP)
  •   1 Terms
      dephosphorylation of RNA polymerase II C-terminal domain (GO:0070940)
GO(MF)
GO(CC)
  •   1 Terms
      DNA-directed RNA polymerase II, holoenzyme (GO:0016591)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018602
(v2.0)
Rprd1aNM_144861225283
10.40169.9332216.242460.557947.798113.08187.5295814.387141.67315.1135
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018074
(v1.0)
Rprd1a225283
Major ZGA0.97896
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018602
(v2.0)
Rprd1a225283
467/2440.4222290/2440.132568/2441.7088200/2441.036817/244-1.7274122/244-1.5874
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018602
(v2.0)
Rprd1a225283
331/1470.6546170/1470.092967/1472.3744195/1471.721814/147-1.275384/147-1.3907
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018602
(v2.0)
Rprd1a225283
45.77413134.94
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018602
(v2.0)
Rprd1a225283
18.014610217.66
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018074
(v1.0)
Rprd1aNM_144861225283
10.320811.202345.089833.10785.30864
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018074
(v1.0)
Rprd1aFR132643,FR325125,NM_144861225283
47.61546.1486235.398151.15716.3883
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018074
(v1.0)
Rprd1aNM_144861225283
10.79133.8039712.222
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018074
(v1.0)
Rprd1aNM_144861225283
10.533411.089810.6468
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018074
(v1.0)
Rprd1aFR132643,FR325125,NM_144861225283
289.289384.37
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018074
(v1.0)
Rprd1aNM_144861225283
10.79763.7518711.6771
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018074
(v1.0)
Rprd1aNM_144861225283
41.746231.966928.7589
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018074
(v1.0)
Rprd1aFR132643,FR325125,NM_144861225283
275.701276.045
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018074
(v1.0)
Rprd1aNM_144861225283
5.2900822.6669
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018074
(v1.0)
Rprd1aNM_144861225283
1.789942.2957
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018074
(v1.0)
1451631_atMm.28427Rprd1aNM_144861.2225283
00398.200
0018074
(v1.0)
1454964_atMm.28427Rprd1aNM_144861.2225283
00930.35511.575417.5
0018074
(v1.0)
1438065_atMm.28427Rprd1aNM_144861.2225283
00423.5500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018074
(v1.0)
A_51_P375406BC021395NM_144861225283
11P1.3150.222P
0018074
(v1.0)
A_51_P400944BC021395NM_144861225283
11P0.3260.0891P
Proteome N/A