DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018137
GeneRraga
SynonymsFIP-1
Desc.Ras-related GTP binding A
LocusNM_178376 chr4:86221577-86223187(+)
DB links


Entrez 68441
MGI 1915691
Ensembl ENSMUSG00000070934
Vega OTTMUSG00000007449
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018667
(v2.0)
RragaNM_17837668441
30.2385154.26336.4618.187459.4790760.895529.8425365.73613.917858.708
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018137
(v1.0)
Rraga68441
Minor ZGA0.99289
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018667
(v2.0)
Rraga68441
749/4640.1777538/4640.0971660/4644.07431735/4643.227176/464-0.5463587/464-0.2595
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018667
(v2.0)
Rraga68441
413/2000.5311278/2000.3573638/2005.19191581/2004.29697/200-2.615883/200-1.8493
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018667
(v2.0)
Rraga68441
35.198412627.94
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018667
(v2.0)
Rraga68441
9.0156989.2
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018137
(v1.0)
RragaNM_17837668441
160.327232.6086.105436.5625721.2811
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018137
(v1.0)
RragaNM_17837668441
191.715250.9536.823267.5119124.4913
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018137
(v1.0)
RragaNM_17837668441
167.63711.0585253.78
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018137
(v1.0)
RragaNM_17837668441
163.63230.272271.172
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018137
(v1.0)
RragaNM_17837668441
254.848304.001
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018137
(v1.0)
RragaNM_17837668441
167.73410.9071297.412
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018137
(v1.0)
RragaNM_17837668441
5.652676.336429.7531
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018137
(v1.0)
RragaNM_17837668441
7.4308711.4366
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018137
(v1.0)
RragaNM_17837668441
209.5314.67307
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018137
(v1.0)
RragaNM_17837668441
10.703428.2269
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018137
(v1.0)
6006H3014F11-3Mm.311781300010C19Rik68441
U004742NAP003880-001C330039G02RikTC805703U,F,23.75924.24044.06444.17953.19293.35883.4153
0018137
(v1.0)
15629K0216B09-3Mm.311781300010C19Rik68441
U004462NAP008760-001TC836868U,F,23.21413.21562.5592.62972.41862.43532.6593
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018137
(v1.0)
1428905_atMm.31178RragaNM_178376.368441
359.275854.674.47588.65157.325
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018137
(v1.0)
A_51_P226417RragaNM_17837668441
11P0.6720.157P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018137
(v1.0)
Rraga68441
450790