DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018149
GeneRrn3
SynonymsTIF-1A
Desc.RRN3 RNA polymerase I transcription factor homolog (yeast)
LocusNM_001039521 chr16:13780792-13814934(+)
DB links


Entrez 106298
MGI 1925255
Ensembl ENSMUSG00000022682
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018679
(v2.0)
Rrn3NM_001039521106298
10.486731.176656.4576113.5110.98220.795111.913761.437280.474227.7396
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018149
(v1.0)
Rrn3106298
Major ZGA0.97278
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018679
(v2.0)
Rrn3106298
565/3920.0145371/392-0.1951113/3921.7753309/3920.983535/392-1.4022198/392-1.5774
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018679
(v2.0)
Rrn3106298
291/211-0.0488186/211-0.2966103/2112.4997274/2111.69645/211-3.106562/211-2.3382
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018679
(v2.0)
Rrn3106298
57.369211251.22
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018679
(v2.0)
Rrn3106298
26.43568033.04
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018149
(v1.0)
Rrn3NM_001039521106298
32.407439.09484.479476.62038.46384
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018149
(v1.0)
Rrn3NM_001039521106298
40.459344.6345213.594227.34412.1223
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018149
(v1.0)
Rrn3NM_001039521106298
33.88493.835142.6524
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018149
(v1.0)
Rrn3NM_001039521106298
33.07538.701445.4777
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018149
(v1.0)
Rrn3NM_001039521106298
71.664453.0145
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018149
(v1.0)
Rrn3NM_001039521106298
33.90463.7825749.8784
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018149
(v1.0)
Rrn3NM_001039521106298
78.214873.979955.7172
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018149
(v1.0)
Rrn3NM_001039521106298
224.89370.9481
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018149
(v1.0)
Rrn3NM_001039521106298
36.366927.5207
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018149
(v1.0)
Rrn3NM_001039521106298
2.25091.90916
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018149
(v1.0)
21481L0856B09-3Mm.29072AL023001106298
U016834NAP006439-001AL023001;TC892850U,F,23.33673.64373.76524.24593.50583.72173.4318
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018149
(v1.0)
1415725_atMm.288606Rrn3NM_001039521.1106298
159.4217.45437.6243.2104.875
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018149
(v1.0)
A_51_P314679Rrn3XM_156394106298
11P0.4680.0867P
Proteome N/A