DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018157
GeneRrp8
Synonyms
Desc.ribosomal RNA processing 8, methyltransferase, homolog (yeast)
LocusNM_025897 chr7:112880244-112885098(-)
NM_133951 chr7:112880244-112885899(-)
DB links


Entrez 101867
MGI 1914251
Ensembl ENSMUSG00000030888
Vega OTTMUSG00000025597
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018687
(v2.0)
Rrp8NM_025897,NM_133951101867
16.426336.214366.956224.421736.972311.915415.280761.564226.067512.1836
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018157
(v1.0)
Rrp8101867
1-Cell Transient0.96419
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018687
(v2.0)
Rrp8101867
656/578-0.3296407/578-0.6209154/5781.6723250/5780.121617/578-2.9576128/578-2.7598
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018687
(v2.0)
Rrp8101867
292/208-0.0233170/208-0.405142/2082.9787238/2081.514410/208-2.211859/208-2.3875
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018687
(v2.0)
Rrp8101867
92.32216356.64
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018687
(v2.0)
Rrp8101867
17.46158520.54
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018157
(v1.0)
Rrp8NM_025897,NM_133951101867
37.642246.434618.185625.631510.808
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018157
(v1.0)
Rrp8NM_025897,NM_133951101867
301.763287.264108.644186.67385.5673
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018157
(v1.0)
Rrp8NM_025897,NM_133951101867
39.35846.0072550.6612
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018157
(v1.0)
Rrp8NM_025897,NM_133951101867
38.417745.968445.5626
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018157
(v1.0)
Rrp8NM_025897,NM_133951101867
254.026191.835
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018157
(v1.0)
Rrp8NM_025897,NM_133951101867
39.38125.9249749.9715
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018157
(v1.0)
Rrp8NM_025897,NM_133951101867
16.83724.748318.0767
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018157
(v1.0)
Rrp8NM_025897,NM_133951101867
61.913639.8387
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018157
(v1.0)
Rrp8NM_025897,NM_133951101867
18.44584.30932
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018157
(v1.0)
Rrp8NM_025897,NM_133951101867
2.998685.57818
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018157
(v1.0)
5753H3007G09-3Mm.367661500003O22Rik101867
U029042NAP003957-0011500003O22Rik;TC825742Q9DB85U,F,23.21923.26373.22183.23513.3183.21433.3063
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018157
(v1.0)
1416559_atMm.231400Rrp8NM_133951.1,NM_025897.2101867
146.45110.775102.75156.45147.525
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018157
(v1.0)
A_51_P2935301500003O22RikNM_025897101867
11P0.4390.155P
Proteome N/A