DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018158
GeneRrp9
Synonyms55kDa
D9Wsu10e
Rnu3ip2
U3-55k
Desc.RRP9, small subunit (SSU) processome component, homolog (yeast)
LocusNM_145620 chr9:106379640-106387746(+)
DB links


Entrez 27966
MGI 2384313
Ensembl ENSMUSG00000041506
Vega OTTMUSG00000033577
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018688
(v2.0)
Rrp9NM_14562027966
13.304315.70439.16605163.1288.58685.555922.139510.944477.746295.7471
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018158
(v1.0)
Rrp927966
2-Cell Transient0.98938
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018688
(v2.0)
Rrp927966
768/601-0.1588369/601-0.8181152/6011.5984445/6010.894920/601-2.7911186/601-2.2821
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018688
(v2.0)
Rrp927966
281/239-0.278155/239-0.7369142/2392.7886409/2392.09488/239-2.698172/239-2.3063
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018688
(v2.0)
Rrp927966
131.149119766.57
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018688
(v2.0)
Rrp927966
34.00079336.56
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018158
(v1.0)
Rrp9NM_14562027966
16.33136.41307121.58161.335215.9477
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018158
(v1.0)
Rrp9NM_14562027966
196.84898.74061674.24879.927231.182
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018158
(v1.0)
Rrp9NM_14562027966
17.07584.865526.9968
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018158
(v1.0)
Rrp9NM_14562027966
16.66776.348678.10062
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018158
(v1.0)
Rrp9NM_14562027966
73.243271.7641
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018158
(v1.0)
Rrp9NM_14562027966
17.08584.798888.88449
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018158
(v1.0)
Rrp9NM_14562027966
112.56559.221553.7378
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018158
(v1.0)
Rrp9NM_14562027966
403.74408.857
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018158
(v1.0)
Rrp9NM_14562027966
2.447716.77828
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018158
(v1.0)
Rrp9NM_14562027966
1.490560
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018158
(v1.0)
6100H3016G04-5U3-55k-pending27966
U010976NAP031935-1U3-55k;TC904848Q91WM3U,F,22.40072.31092.33792.34742.48912.33052.494
MOE430 N/A
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018158
(v1.0)
A_51_P518163Rnu3ip2NM_14562027966
11P1.0150.914P
Proteome N/A