DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018190
GeneRtf1
SynonymsGtl7
Desc.Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
LocusNM_030112 chr2:119500804-119561143(+)
DB links


Entrez 76246
MGI 1309480
Ensembl ENSMUSG00000027304
Vega OTTMUSG00000016508
Featureprotein-coding
GO(BP)
  •   12 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      endodermal cell fate commitment (GO:0001711)
      transcription, DNA-dependent (GO:0006351)
      DNA-dependent transcription, initiation (GO:0006352)
      regulation of transcription, DNA-dependent (GO:0006355)
      Wnt receptor signaling pathway (GO:0016055)
      histone modification (GO:0016570)
      stem cell maintenance (GO:0019827)
      positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      positive regulation of histone H3-K4 methylation (GO:0051571)
      histone H3-K4 trimethylation (GO:0080182)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018722
(v2.0)
Rtf1NM_03011276246
9.9707118.437731.189216.857418.52436.925238.2230633.457214.06717.83866
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018190
(v1.0)
Rtf176246
1-Cell Transient0.99508
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018722
(v2.0)
Rtf176246
725/3890.3845542/3890.3615495/3893.90731586/3893.3504143/3890.6087860/3890.5441
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018722
(v2.0)
Rtf176246
383/1410.924254/1410.7289475/1415.23721422/1414.640935/1410.0462150/141-0.5058
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018722
(v2.0)
Rtf176246
27.01269428.74
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018722
(v2.0)
Rtf176246
7.52077210.45
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018190
(v1.0)
Rtf1NM_03011276246
19.164621.569612.550212.83215.75779
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018190
(v1.0)
Rtf1FR129424,NM_03011276246
285.333229.576159.583143.73438.7712
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018190
(v1.0)
Rtf1NM_03011276246
20.03843.6463923.5329
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018190
(v1.0)
Rtf1NM_03011276246
19.559421.35324.7912
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018190
(v1.0)
Rtf1FR129424,NM_03011276246
849.486844.411
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018190
(v1.0)
Rtf1NM_03011276246
20.053.5964527.1902
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018190
(v1.0)
Rtf1NM_03011276246
11.619512.38999.74198
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018190
(v1.0)
Rtf1FR129424,NM_03011276246
395.889323.079
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018190
(v1.0)
Rtf1NM_03011276246
27.38597.41405
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018190
(v1.0)
Rtf1NM_03011276246
20.862329.7141
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018190
(v1.0)
13912J0230H11-3Mm.334376530416A09Rik76246
U002321NAP096762-001Gtl7;TC881451Q9CTY6U,F2.5882.65182.71292.62952.33582.4032.3536
0018190
(v1.0)
14857J0900E07-3Mm.334376530416A09Rik76246
2.65192.58972.69442.61753.13982.95723.0749
0018190
(v1.0)
18899L0234D04-3Mm.334376530416A09Rik76246
U002322NAP015091-001TC881451U,F3.44713.32173.24853.42553.70843.57563.6331
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018190
(v1.0)
1429047_atMm.33437Rtf1NM_030112.276246
000853.851026.8
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018190
(v1.0)
A_51_P164553Gtl7XM_28375776246
11P0.8410.333P
0018190
(v1.0)
A_52_P312826Gtl7XM_28375776246
11P0.760.222P
0018190
(v1.0)
A_52_P312828Gtl7XM_28375776246
11P1.1330.428P
Proteome N/A