DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018197
GeneRtn3
Synonyms
Desc.reticulon 3
LocusNM_053076 chr19:7500385-7557781(-)
NM_001271486 chr19:7500385-7557781(-)
NM_001271487 chr19:7500385-7557781(-)
NM_001003934 chr19:7500385-7557781(-)
NM_001003933 chr19:7500385-7557781(-)
DB links


Entrez 20168
MGI 1339970
Ensembl ENSMUSG00000024758
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018729
(v2.0)
Rtn3NM_001003933,NM_001003934,NM_001271486,NM_001271487,NM_05307620168
85.444424.264836.27778.930314.3584660.034445.971924.93554.4299159.6599
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018197
(v1.0)
Rtn320168
Minor ZGA0.99726
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018729
(v2.0)
Rtn320168
610/3310.3682433/3310.2706435/3313.94661043/3312.977632/331-1.2865165/331-1.5949
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018729
(v2.0)
Rtn320168
314/1270.7883220/1270.6722412/1275.1707942/1274.19548/127-1.807558/127-1.7042
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018729
(v2.0)
Rtn320168
38.415912830.01
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018729
(v2.0)
Rtn320168
9.5277979.82
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018197
(v1.0)
Rtn3NM_001003933,NM_001003934,NM_05307620168
25.375525.11766.681833.036632.7307
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018197
(v1.0)
Rtn3NM_001003933,NM_001003934,NM_05307620168
32.3928.71797.86193.704639.5267
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018197
(v1.0)
Rtn3NM_001003933,NM_001003934,NM_05307620168
26.532431.437527.4039
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018197
(v1.0)
Rtn3NM_001003933,NM_001003934,NM_05307620168
25.898324.865418.6279
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018197
(v1.0)
Rtn3NM_001003933,NM_001003934,NM_05307620168
29.168122.0593
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018197
(v1.0)
Rtn3NM_001003933,NM_001003934,NM_05307620168
26.547831.006920.4304
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018197
(v1.0)
Rtn3NM_001003933,NM_001003934,NM_05307620168
6.186342.931963.09752
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018197
(v1.0)
Rtn3NM_001003933,NM_001003934,NM_05307620168
3.664634.19478
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018197
(v1.0)
Rtn3NM_001003933,NM_001003934,NM_05307620168
9.4741511.87
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018197
(v1.0)
Rtn3NM_001003933,NM_001003934,NM_05307620168
6.190147.14543
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018197
(v1.0)
3250C0623G11-3Mm.21606Rtn320168
U038683NAP002611-001Rtn3;TC891556Q9ES97U,F,23.34723.32433.30133.22953.06463.16433.1607
0018197
(v1.0)
19730L0296F01-3Rtn320168
U038683NAP002611-001Rtn3;TC891556Q9ES97U,F,22.80742.9982.9792.83422.76212.73242.9916
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018197
(v1.0)
1418101_a_atMm.246990Rtn3NM_001003934.1,NM_001003933.1,NM_053076.220168
196.35121.525102.150308.975
0018197
(v1.0)
1425539_a_atMm.246990Rtn3NM_001003934.1,NM_001003933.1,NM_053076.220168
81.925159.2113.8750181.7
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018197
(v1.0)
A_51_P494646Rtn3NM_00100393420168
11P0.5950.131P
0018197
(v1.0)
A_52_P191975Rtn3NM_00100393020168
11P0.5070.114P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018197
(v1.0)
Rtn320168
011011