DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018209
GeneRufy1
SynonymsRabip4
ZFYVE12
Desc.RUN and FYVE domain containing 1
LocusNM_172557 chr11:50202805-50244613(-)
DB links


Entrez 216724
MGI 2429762
Ensembl ENSMUSG00000020375
Vega OTTMUSG00000005584
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018741
(v2.0)
Rufy1NM_172557216724
23.975540.090528.68287.444976.384982.458986.5649526.06448.652772.65391
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018209
(v1.0)
Rufy1216724
Maternal RNA0.99104
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018741
(v2.0)
Rufy1216724
705/4660.0843444/466-0.1855115/4661.5578192/4660.051852/466-1.0913393/466-0.8427
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018741
(v2.0)
Rufy1216724
310/1870.2153184/187-0.1388110/1872.7579164/1871.131411/187-1.9359115/187-1.2896
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018741
(v2.0)
Rufy1216724
66.987312653.16
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018741
(v2.0)
Rufy1216724
18.22987424.63
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018209
(v1.0)
Rufy1NM_172557216724
41.668819.90865.543364.426544.57645
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018209
(v1.0)
Rufy1NM_172557216724
270.316112.95340.94739.658225.172
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018209
(v1.0)
Rufy1NM_172557216724
43.56868.7680921.7207
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018209
(v1.0)
Rufy1NM_172557216724
42.527219.708719.3116
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018209
(v1.0)
Rufy1NM_172557216724
98.592770.591
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018209
(v1.0)
Rufy1NM_172557216724
43.59398.6479921.1803
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018209
(v1.0)
Rufy1NM_172557216724
5.132284.2746.0317
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018209
(v1.0)
Rufy1NM_172557216724
27.181652.252
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018209
(v1.0)
Rufy1NM_172557216724
38.46822.75667
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018209
(v1.0)
Rufy1NM_172557216724
1.962122.09083
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018209
(v1.0)
19631L0287A02-3Mm.33851Rab4aip-pending216724
U032728NAP094894-001TC859574,TC859573Q9EPM6U,F,23.55513.65323.88273.73873.43323.60033.4188
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018209
(v1.0)
1434131_atMm.390400Rufy1NM_172557.2216724
865.225196.8169.62581.42578.55
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018209
(v1.0)
A_51_P163694Rufy1NM_172557216724
11P1.250.273P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018209
(v1.0)
Rufy1216724
101112212120