DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018215
GeneRundc3b
SynonymsLOC242819
Desc.RUN domain containing 3B
LocusNM_198620 chr5:8490336-8622952(-)
DB links


Entrez 242819
MGI 2685286
Ensembl ENSMUSG00000040570
Vega OTTMUSG00000023112
Featureprotein-coding
GO(BP)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018747
(v2.0)
Rundc3bNM_198620242819
0.14361619.257647.655323.29524.773551.251750.97858635.35584.832591.4426
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018215
(v1.0)
Rundc3b242819
Minor ZGA0.99485
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018747
(v2.0)
Rundc3b242819
529/2740.4349414/2740.477879/2741.7624211/2740.948208/2741.6454899/2741.112
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018747
(v2.0)
Rundc3b242819
288/1290.6419198/1290.498779/1292.7821185/1291.831389/1291.4926404/1291.0419
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018747
(v2.0)
Rundc3b242819
31.00586845.6
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018747
(v2.0)
Rundc3b242819
5.4934113.4
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018215
(v1.0)
Rundc3bNM_198620242819
20.015432.919917.34993.307380.704283
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018215
(v1.0)
Rundc3bFR327611,NM_198620242819
128.071192.002111.18230.26251.00237
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018215
(v1.0)
Rundc3bNM_198620242819
20.9280.052521835.9164
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018215
(v1.0)
Rundc3bNM_198620242819
20.427832.589426.1765
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018215
(v1.0)
Rundc3bFR327611,NM_198620242819
207.04985.1099
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018215
(v1.0)
Rundc3bNM_198620242819
20.94010.051802428.7095
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018215
(v1.0)
Rundc3bNM_198620242819
16.06333.19343.33019
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018215
(v1.0)
Rundc3bFR327611,NM_198620242819
4.034834.24015
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018215
(v1.0)
Rundc3bNM_198620242819
8.207166.29453
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018215
(v1.0)
Rundc3bNM_198620242819
22.371720.1928
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018215
(v1.0)
1434456_atMm.332192Rundc3bNM_198620.1242819
1311.22520931749.600
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018215
(v1.0)
A_52_P619192Gm440NM_198620242819
11P1.40.184P
Proteome N/A