DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018291
GeneSamhd1
Synonyms
Desc.SAM domain and HD domain, 1
LocusNM_001139520 chr2:156923265-156960958(-)
NM_018851 chr2:156923265-156960958(-)
DB links


Entrez 56045
MGI 1927468
Ensembl ENSMUSG00000027639
Vega OTTMUSG00000016173
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018824
(v2.0)
Samhd1NM_001139520,NM_01885156045
28.505223.175132.879311.35554.665824.3708110.000534.39015.520194.25429
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018291
(v1.0)
Samhd156045
Minor ZGA0.98873
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018824
(v2.0)
Samhd156045
475/348-0.0638302/348-0.3197116/3481.979351/3481.33749/348-3.0804131/348-1.9964
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018824
(v2.0)
Samhd156045
241/1510.1607141/151-0.213596/1512.8511252/1512.0525/151-2.634963/151-1.8357
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018824
(v2.0)
Samhd156045
46.720212936.22
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018824
(v2.0)
Samhd156045
10.93148512.86
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018291
(v1.0)
Samhd1NM_001139520,NM_01885156045
24.093922.72118.456823.246967.05322
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018291
(v1.0)
Samhd1NM_001139520,NM_01885156045
30.560125.890968.706458.010421.342
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018291
(v1.0)
Samhd1NM_001139520,NM_01885156045
25.192410.424624.7892
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018291
(v1.0)
Samhd1NM_001139520,NM_01885156045
24.590222.49325.4655
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018291
(v1.0)
Samhd1NM_001139520,NM_01885156045
26.293230.3698
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018291
(v1.0)
Samhd1NM_001139520,NM_01885156045
25.20710.281927.9297
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018291
(v1.0)
Samhd1NM_001139520,NM_01885156045
7.82973.135073.82965
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018291
(v1.0)
Samhd1NM_001139520,NM_01885156045
4.020424.77772
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018291
(v1.0)
Samhd1NM_001139520,NM_01885156045
27.48348.1923
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018291
(v1.0)
Samhd1NM_001139520,NM_01885156045
19.29447.99068
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018291
(v1.0)
14324J0446F10-3Mm.196457Samhd156045
2.71622.6562.56812.47762.73352.60762.6525
0018291
(v1.0)
15469K0148D05-3Mm.196457Samhd156045
U023575NAP089536-1Samhd1;TC909152,TC849344Q60710U,F,22.44272.53322.74462.81792.28822.47342.3
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018291
(v1.0)
1418131_atMm.248478Samhd1NM_001139520.1,NM_018851.356045
230.6250140.500
Agilent44K N/A
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018291
(v1.0)
Samhd156045
130130