DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018337
GeneScaf1
Synonyms
Desc.SR-related CTD-associated factor 1
LocusNM_001008422 chr7:52258320-52271619(-)
DB links


Entrez 233208
MGI 2141980
Ensembl ENSMUSG00000038406
Vega OTTMUSG00000028917
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018871
(v2.0)
Scaf1NM_001008422233208
15.960527.982842.036312.54814.8535916.12758.4587986.35785.7538714.8286
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018337
(v1.0)
Scaf1233208
Minor ZGA0.99282
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018871
(v2.0)
Scaf1233208
863/5170.226353/517-0.6651153/5171.8204523/5171.343750/517-1.2954406/517-0.9454
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018871
(v2.0)
Scaf1233208
360/1870.4302163/187-0.3125143/1873.1334465/1872.629338/187-0.2355231/187-0.2928
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018871
(v2.0)
Scaf1233208
91.72217951.24
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018871
(v2.0)
Scaf1233208
9.48988910.66
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018337
(v1.0)
Scaf1NM_001008422233208
29.10629.20639.333663.356045.90709
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018337
(v1.0)
Scaf1NM_001008422233208
129.483114.26736.700418.829527.8965
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018337
(v1.0)
Scaf1NM_001008422233208
30.4335.8369431.8647
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018337
(v1.0)
Scaf1NM_001008422233208
29.705628.91363.9738
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018337
(v1.0)
Scaf1NM_001008422233208
104.378157.495
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018337
(v1.0)
Scaf1NM_001008422233208
30.45075.7569970.1643
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018337
(v1.0)
Scaf1NM_001008422233208
8.641513.240394.02393
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018337
(v1.0)
Scaf1NM_001008422233208
16.040129.6797
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018337
(v1.0)
Scaf1NM_001008422233208
8.042372.14341
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018337
(v1.0)
Scaf1NM_001008422233208
2.528881.94366
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A