DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018340
GeneScaf8
SynonymsRbm16
Desc.SR-related CTD-associated factor 8
LocusNM_134123 chr17:3114972-3198859(+)
DB links


Entrez 106583
MGI 1925212
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018874
(v2.0)
Scaf8NM_134123106583
8.2645529.941738.62222.451521.13979.3414122.166131.078318.28418.88475
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018340
(v1.0)
Scaf8106583
Minor ZGA0.99447
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018874
(v2.0)
Scaf8106583
533/2470.5948373/2470.4768250/2473.5551504/2472.34843/247-3.914777/247-2.2587
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018874
(v2.0)
Scaf8106583
378/1181.16217/1180.7577250/1184.5487491/1183.36072/118-3.289951/118-1.7795
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018874
(v2.0)
Scaf8106583
40.82217723.06
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018874
(v2.0)
Scaf8106583
15.260315010.17
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018340
(v1.0)
Scaf8NM_134123106583
31.125826.667816.707414.628915.5221
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018340
(v1.0)
Scaf8FR155437,FR219406,FR229813,FR252934,NM_134123106583
131.01893.454581.899756.176350.0621
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018340
(v1.0)
Scaf8NM_134123106583
32.54493.0224329.0952
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018340
(v1.0)
Scaf8NM_134123106583
31.76726.400123.0224
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018340
(v1.0)
Scaf8FR155437,FR219406,FR229813,FR252934,NM_134123106583
156.708114.34
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018340
(v1.0)
Scaf8NM_134123106583
32.56382.9810425.2501
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018340
(v1.0)
Scaf8NM_134123106583
15.468514.124812.6362
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018340
(v1.0)
Scaf8FR155437,FR219406,FR229813,FR252934,NM_134123106583
54.571246.8534
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018340
(v1.0)
Scaf8NM_134123106583
16.65768.76251
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018340
(v1.0)
Scaf8NM_134123106583
16.723119.8714
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018340
(v1.0)
1426826_atMm.482311Scaf8NM_134123.3106583
247.825426.025209.575173.1240.925
0018340
(v1.0)
1455310_atMm.482311Scaf8NM_134123.3106583
50.15046.075033.625
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018340
(v1.0)
A_51_P494006Rbm16AK088735106583
11P0.8390.33P
Proteome N/A