DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018403
GeneScmh1
SynonymsScml3
Desc.sex comb on midleg homolog 1
LocusNM_001159630 chr4:120077886-120202804(+)
NM_013883 chr4:120077886-120202804(+)
DB links


Entrez 29871
MGI 1352762
Ensembl ENSMUSG00000000085
Vega OTTMUSG00000008809
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018942
(v2.0)
Scmh1NM_001159630,NM_01388329871
14.144430.335237.73417.93024.799193.062515.7469553.7455.061764.30754
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018403
(v1.0)
Scmh129871
Minor ZGA0.9698
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018942
(v2.0)
Scmh129871
570/3500.1903358/350-0.083483/3501.493224/3500.683566/350-0.3444504/350-0.0731
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018942
(v2.0)
Scmh129871
308/1600.4297171/160-0.020176/1602.4405195/1601.601620/160-0.9089166/160-0.5421
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018942
(v2.0)
Scmh129871
47.519914832.11
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018942
(v2.0)
Scmh129871
17.211511415.1
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018403
(v1.0)
Scmh1NM_001159630,NM_01388329871
31.555526.10085.904923.326543.98769
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018403
(v1.0)
Scmh1FR393807,FR395056,NM_001159630,NM_01388329871
42.975832.46257.0406214.104311.9932
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018403
(v1.0)
Scmh1NM_001159630,NM_01388329871
32.99425.1722928.4766
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018403
(v1.0)
Scmh1NM_001159630,NM_01388329871
32.205625.838839.8522
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018403
(v1.0)
Scmh1FR393807,FR395056,NM_001159630,NM_01388329871
32.963473.3058
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018403
(v1.0)
Scmh1NM_001159630,NM_01388329871
33.01335.1014543.7085
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018403
(v1.0)
Scmh1NM_001159630,NM_01388329871
5.467033.211913.50214
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018403
(v1.0)
Scmh1FR393807,FR395056,NM_001159630,NM_01388329871
8.314919.87532
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018403
(v1.0)
Scmh1NM_001159630,NM_01388329871
81.33478.32179
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018403
(v1.0)
Scmh1NM_001159630,NM_01388329871
2.9196612.3564
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018403
(v1.0)
11338H3113B01-3Scmh129871
U004749NAP097139-001Scmh1;Scml1;Scml3;TC920789,TC920787,TC920786,TC867342Q9JME0U,F,24.27014.06424.15214.30474.88524.54924.8148
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018403
(v1.0)
1426241_a_atMm.427014Scmh1NM_013883.2,NM_001159630.129871
138.150000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018403
(v1.0)
A_52_P31246Scmh1NM_01388329871
11P1.3230.267P
Proteome N/A