DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018426
GeneScoc
Synonymsshort coiled-coil protein
Desc.short coiled-coil protein
LocusNM_019708 chr8:85958392-85966547(-)
NM_001039137 chr8:85958392-85982290(-)
DB links


Entrez 56367
MGI 1927654
Ensembl ENSMUSG00000063253
Featureprotein-coding
GO(BP)
  •   1 Terms
      positive regulation of macroautophagy (GO:0016239)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018965
(v2.0)
ScocNM_001039137,NM_001285992,NM_01970856367
7.6660944.6086109.316153.51930.081635.286131.057363.635231.067334.7917
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018426
(v1.0)
Scoc56367
Major ZGA0.99085
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018965
(v2.0)
Scoc56367
596/4110.0233427/411-0.0619/411-1.802140/411-0.221184/4110.89161468/4111.2353
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018965
(v2.0)
Scoc56367
282/1710.2078190/1710.03565/171-1.330752/171-0.379788/1711.081706/1711.441
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018965
(v2.0)
Scoc56367
32.197510331.26
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018965
(v2.0)
Scoc56367
8.00477610.53
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018426
(v1.0)
ScocNM_001039137,NM_01970856367
46.494475.3616114.66220.915722.0767
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018426
(v1.0)
ScocNM_001039137,NM_01970856367
2554.553582.344821.93949.431965.14
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018426
(v1.0)
ScocNM_001039137,NM_01970856367
48.61422.8278682.2212
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018426
(v1.0)
ScocNM_001039137,NM_01970856367
47.452374.604947.1991
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018426
(v1.0)
ScocNM_001039137,NM_01970856367
21.154612.0086
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018426
(v1.0)
ScocNM_001039137,NM_01970856367
48.64252.7891351.7664
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018426
(v1.0)
ScocNM_001039137,NM_01970856367
106.15920.194921.6033
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018426
(v1.0)
ScocNM_001039137,NM_01970856367
5.773996.64972
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018426
(v1.0)
ScocNM_001039137,NM_01970856367
37.033391.2396
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018426
(v1.0)
ScocNM_001039137,NM_01970856367
29.370613.1352
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018426
(v1.0)
12466H3144A10-3Mm.24763Scoc56367
U030014NAP093550-001TC836502Q9WU55U,F,23.5543.2892.83032.89982.47992.43142.4189
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018426
(v1.0)
1416267_atMm.246911ScocNM_019708.3,NM_001039137.256367
148198.45239.52536.27524.575
0018426
(v1.0)
1430999_a_atMm.246911ScocNM_019708.3,NM_001039137.256367
66.4107.313900
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018426
(v1.0)
A_51_P466886ScocNM_01970856367
11P0.4690.0914P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018426
(v1.0)
Scoc56367
001002