DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0018455

Gene

Sde2

Synonyms

BC031781

Description

SDE2 telomere maintenance homolog (S. pombe)

Locus

NM_145943 UCSC: chr1:182781282-182798245(+) OLP: chr1:182781282-182798245(+)

DB links

Entrez 208768
MGI 2384788
Ensembl ENSMUSG00000038806

Feature

protein-coding

GO_BP

GO_MF

GO_CC

KEGG

see DBTMEE:2018995 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0018455 (v1.0)	BC031781	NM_145943	208768	4.10853	7.39495	19.8533	21.2573	5.02584

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0018455 (v1.0)	BC031781	NM_145943	208768	4.29585	2.12449	8.06805

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0018455 (v1.0)	BC031781	NM_145943	208768	4.19317	7.32069	7.20044

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0018455 (v1.0)	BC031781	NM_145943	208768	4.29834	2.09539	7.8972

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0018455 (v1.0)	BC031781	NM_145943	208768	18.3811	20.5248	20.4304

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0018455 (v1.0)	BC031781	NM_145943	208768	2.16267	8.14202

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0018455 (v1.0)	BC031781	NM_145943	208768	4.10028	4.35784

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0018455 (v1.0)	732	C0136A06-3	Mm.56547	MGC30618	208768	U001198	NAP007193-001	MGC30618;	TC875705		U,F,2	3.1931	3.5015	3.9489	4.0207	3.3367	3.9423	3.7422
0018455 (v1.0)	6241	H3021B07-5		MGC30618	208768	U001198	NAP007193-001	MGC30618;	TC875705		U,F,2	3.0583	3.1275	3.2267	3.221	2.9819	3.1124	3.0028

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0018455 (v1.0)	1436511_at	Mm.272625	BC031781	NM_145943.1	208768	450.025	625.7	1117.03	1902.32	1733.03
0018455 (v1.0)	1459829_x_at	Mm.272625	BC031781	NM_145943.1	208768	247.8	273.1	281.625	0	308.325
0018455 (v1.0)	1447804_x_at	Mm.272625	BC031781	NM_145943.1	208768	383.7	394.175	236.45	451.925	461.075
0018455 (v1.0)	1436151_x_at	Mm.272625	BC031781	NM_145943.1	208768	0	792.525	0	651.25	1199.35

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0018455 (v1.0)	A_51_P373112	BC031781	NM_145943	208768	1	1	P	1.268	0.253	P
0018455 (v1.0)	A_52_P535907	BC031781	NM_145943	208768	1	1	P	0.991	0.952	P

N/A