DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018485
GeneSec16a
Synonyms
Desc.SEC16 homolog A (S. cerevisiae)
LocusNM_153125 chr2:26264951-26300736(-)
DB links


Entrez 227648
MGI 2139207
Ensembl ENSMUSG00000026924
Vega OTTMUSG00000012771
Featureprotein-coding
GO(BP)
GO(MF)
  •   1 Terms
      inositol-polyphosphate 5-phosphatase activity (GO:0004445)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019025
(v2.0)
Sec16aNM_153125227648
16.941752.341164.620749.182823.12856.1407410.30979.471319.39875.63328
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018485
(v1.0)
Sec16a227648
Maternal RNA0.99338
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019025
(v2.0)
Sec16a227648
837/5380.1246508/538-0.1986965/5384.41332294/5383.417420/538-2.6325170/538-2.2513
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019025
(v2.0)
Sec16a227648
411/2100.4541251/2100.1405857/2105.55061893/2104.48715/210-3.099854/210-2.5256
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019025
(v2.0)
Sec16a227648
49.170813636.15
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019025
(v2.0)
Sec16a227648
12.75969513.43
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018485
(v1.0)
Sec16aNM_153125227648
54.440844.585536.53315.96137.18032
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018485
(v1.0)
Sec16aFR086189,FR104694,NM_153125227648
474.157301.777246.032154.09980.5009
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018485
(v1.0)
Sec16aNM_153125227648
56.92296.1957548.6438
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018485
(v1.0)
Sec16aNM_153125227648
55.562444.137858.7871
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018485
(v1.0)
Sec16aFR086189,FR104694,NM_153125227648
210.871370.174
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018485
(v1.0)
Sec16aNM_153125227648
56.9566.1108964.4757
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018485
(v1.0)
Sec16aNM_153125227648
33.823915.411213.4371
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018485
(v1.0)
Sec16aFR086189,FR104694,NM_153125227648
160.991130.613
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018485
(v1.0)
Sec16aNM_153125227648
31.165344.3389
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018485
(v1.0)
Sec16aNM_153125227648
6.426864.7906
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018485
(v1.0)
8812H3072D12-3Mm.224876MGC38812227648
U022424NAP094804-001MGC38812;TC930671U,F,23.64553.56653.16823.31512.74282.92352.9556
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018485
(v1.0)
1426814_atMm.206371Sec16aNM_153125.2227648
240.8343.35284.7214.825203.025
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018485
(v1.0)
A_51_P249348AU024582NM_153125227648
11P0.9760.879P
0018485
(v1.0)
A_52_P165001AU024582NM_153125227648
11P0.5340.134P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018485
(v1.0)
Sec16a227648
261261