DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018487
GeneSec22a
SynonymsSec22l2
Desc.SEC22 vesicle trafficking protein homolog A (S. cerevisiae)
LocusNM_133704 chr16:35311217-35364004(-)
DB links


Entrez 317717
MGI 2447876
Ensembl ENSMUSG00000034473
Vega OTTMUSG00000025485
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019027
(v2.0)
Sec22aNM_133704317717
3.2637240.214737.53194.617714.989947.102325.906725.58396.011378.66567
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018487
(v1.0)
Sec22a317717
Maternal RNA0.9967
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019027
(v2.0)
Sec22a317717
688/4370.1416461/437-0.039144/4371.97489/4371.4881165/4370.6477908/4370.4548
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019027
(v2.0)
Sec22a317717
319/1750.3516204/1750.1044140/1753.1927461/1752.711265/1750.617324/1750.2878
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019027
(v2.0)
Sec22a317717
66.636313449.73
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019027
(v2.0)
Sec22a317717
16.35458020.44
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018487
(v1.0)
Sec22aNM_133704317717
41.785825.98483.44063.459594.10664
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018487
(v1.0)
Sec22aNM_133704317717
52.637129.19173.953364.230714.9343
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018487
(v1.0)
Sec22aNM_133704317717
43.69091.1935828.35
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018487
(v1.0)
Sec22aNM_133704317717
42.646725.723918.9412
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018487
(v1.0)
Sec22aNM_133704317717
29.64322.129
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018487
(v1.0)
Sec22aNM_133704317717
43.71631.1772320.7741
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018487
(v1.0)
Sec22aNM_133704317717
3.185463.340374.18818
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018487
(v1.0)
Sec22aNM_133704317717
4.185035.09532
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018487
(v1.0)
Sec22aNM_133704317717
11.62491.70666
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018487
(v1.0)
Sec22aNM_133704317717
6.962385.33158
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018487
(v1.0)
19517L0276G03-3Mm.46676Sec22l2317717
U037004NAP003263-0011810005C06Rik;TC893020Q91Z54U,F,23.37653.71323.27472.94353.04023.19293.2182
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018487
(v1.0)
1416320_atMm.259164Sec22aNM_133704.4317717
716.05676.975227.50112.775
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018487
(v1.0)
A_51_P518658Sec22l2NM_133704317717
11P0.4010.116P
0018487
(v1.0)
A_52_P230639Sec22l2NM_133704317717
11P0.4710.0855P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018487
(v1.0)
Sec22a317717
100100