DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018501
GeneSec61b
Synonyms
Desc.Sec61 beta subunit
LocusNM_024171 chr4:47487533-47496105(+)
DB links


Entrez 66212
MGI 1913462
Ensembl ENSMUSG00000053317
Vega OTTMUSG00000006799
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019041
(v2.0)
Sec61bNM_02417166212
211.227248.694284.28825.808894.9331148.127214.402175.74687.5461162.757
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018501
(v1.0)
Sec61b66212
Maternal RNA0.97552
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019041
(v2.0)
Sec61b66212
675/495-0.0652460/495-0.2215128/4951.6261323/4950.712515/495-2.9056104/495-2.8322
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019041
(v2.0)
Sec61b66212
266/1830.0266173/183-0.1961120/1832.9116306/1832.0583/183-3.490445/183-2.5833
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019041
(v2.0)
Sec61b66212
109.528119655.88
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019041
(v2.0)
Sec61b66212
15.59419815.91
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018501
(v1.0)
Sec61bNM_02417166212
258.404197.11919.258766.2622150.755
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018501
(v1.0)
Sec61bNM_02417166212
49.079532.77985.1257913.561834.4071
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018501
(v1.0)
Sec61bNM_02417166212
270.18577.248215.061
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018501
(v1.0)
Sec61bNM_02417166212
263.727195.139130.792
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018501
(v1.0)
Sec61bNM_02417166212
33.279612.7443
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018501
(v1.0)
Sec61bNM_02417166212
270.34276.19143.448
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018501
(v1.0)
Sec61bNM_02417166212
17.830663.978860.7213
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018501
(v1.0)
Sec61bNM_02417166212
13.413610.6084
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018501
(v1.0)
Sec61bNM_02417166212
8.30822.67047
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018501
(v1.0)
Sec61bNM_02417166212
311.75425.546
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018501
(v1.0)
3644C0842H03-3Mm.201881190006C12Rik66212
U004300NAP032828-11190006C12Rik;TC815263Q9CQS82.09882.36792.50632.36282.0962.24142.2285
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018501
(v1.0)
1417083_atMm.20188Sec61bNM_024171.266212
808.151098.875383.5439.9251021.475
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018501
(v1.0)
A_52_P93886Sec61bNM_02417166212
11P1.1440.405P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018501
(v1.0)
Sec61b66212
322424