DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018544
GeneSenp3
SynonymsSmt3ip1
Desc.SUMO/sentrin specific peptidase 3
LocusNM_030702 chr11:69486612-69495472(-)
NM_001163571 chr11:69486612-69495586(-)
DB links


Entrez 80886
MGI 2158736
Ensembl ENSMUSG00000005204
Vega OTTMUSG00000006011
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019085
(v2.0)
Senp3NM_001163571,NM_03070280886
20.719931.480447.650186.8125141.445148.39837.946968.1917112.919149.797
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018544
(v1.0)
Senp380886
MGA0.98598
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019085
(v2.0)
Senp380886
778/4870.1627383/487-0.4617408/4873.31371205/4872.632159/487-0.9754552/487-0.4176
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019085
(v2.0)
Senp380886
350/1990.3004186/199-0.2125375/1994.43361035/1993.693312/199-1.9083145/199-1.0483
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019085
(v2.0)
Senp380886
90.930818748.63
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019085
(v2.0)
Senp380886
30.364812125.09
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018544
(v1.0)
Senp3NM_001163571,NM_03070280886
32.734733.066664.665497.881627.1007
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018544
(v1.0)
Senp3NM_001163571,NM_03070280886
428.765454.766534.6031031.59326.969
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018544
(v1.0)
Senp3NM_001163571,NM_03070280886
34.22717.5767836.0764
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018544
(v1.0)
Senp3NM_001163571,NM_03070280886
33.409132.734650.6021
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018544
(v1.0)
Senp3NM_001163571,NM_03070280886
103.825168.011
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018544
(v1.0)
Senp3NM_001163571,NM_03070280886
34.2477.4730255.4986
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018544
(v1.0)
Senp3NM_001163571,NM_03070280886
59.870194.508678.3333
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018544
(v1.0)
Senp3NM_001163571,NM_03070280886
885.854772.603
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018544
(v1.0)
Senp3NM_001163571,NM_03070280886
12.412325.6854
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018544
(v1.0)
Senp3NM_001163571,NM_03070280886
0.5163762.85087
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018544
(v1.0)
7421H3047G02-3Mm.22271Smt3ip1-pending80886
U032975NAP107179-1SENP3;Smt3ip1;TC914581,TC910874Q9EP97U,F,23.38623.22423.22333.19873.75543.39683.6055
0018544
(v1.0)
14591J0726C11-3Mm.22271Smt3ip1-pending80886
NAP049128-1TC9145812.61742.65942.62562.68222.90412.61632.7619
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018544
(v1.0)
1448866_atMm.422171Senp380886
337.225341.925779.375621.025472.7
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018544
(v1.0)
A_51_P293926Senp3NM_03070280886
11P1.1250.466P
0018544
(v1.0)
A_52_P574398Senp3NM_03070280886
11P2.370.0789P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018544
(v1.0)
Senp380886
100100