DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018554
GeneSepsecs
SynonymsD5Ertd135e
SecS
SLA
Desc.Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
LocusNM_172490 chr5:53034646-53060940(-)
DB links


Entrez 211006
MGI 1098791
Ensembl ENSMUSG00000029173
Vega OTTMUSG00000023343
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   2 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019095
(v2.0)
SepsecsNM_172490211006
4.0534425.372220.10364.441696.169732.038868.8023524.1237.395091.73544
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018554
(v1.0)
Sepsecs211006
Maternal RNA0.99617
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019095
(v2.0)
Sepsecs211006
578/3710.1265442/3710.136183/3711.4117236/3710.675138/3710.6254842/3710.5818
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019095
(v2.0)
Sepsecs211006
281/1490.4001186/1490.202579/1492.5909216/1491.849533/149-0.1137230/1490.0268
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019095
(v2.0)
Sepsecs211006
60.609810657.18
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019095
(v2.0)
Sepsecs211006
15.06595626.9
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018554
(v1.0)
SepsecsNM_172490211006
26.366513.95133.304814.278316.17224
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018554
(v1.0)
SepsecsFR179446,NM_172490211006
115.04219.714413.93618.8673327.165
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018554
(v1.0)
SepsecsNM_172490211006
27.56861.4823815.2211
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018554
(v1.0)
SepsecsNM_172490211006
26.909713.811217.8612
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018554
(v1.0)
SepsecsFR179446,NM_172490211006
109.07580.4361
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018554
(v1.0)
SepsecsNM_172490211006
27.58461.4620819.5895
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018554
(v1.0)
SepsecsNM_172490211006
3.059744.130875.1586
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018554
(v1.0)
SepsecsFR179446,NM_172490211006
21.798224.7676
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018554
(v1.0)
SepsecsNM_172490211006
12.15221.35978
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018554
(v1.0)
SepsecsNM_172490211006
0.3039020.564498
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018554
(v1.0)
1435946_atMm.244719SepsecsNM_172490.3211006
0113.45000
0018554
(v1.0)
1435161_atMm.244719SepsecsNM_172490.3211006
882.12511270407.7627.775
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018554
(v1.0)
A_52_P406995D5Ertd135eNM_172490211006
11P2.2420.0978P
Proteome N/A