DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018673
GeneSf3a1
Synonyms
Desc.splicing factor 3a, subunit 1
LocusNM_026175 chr11:4060357-4082544(+)
DB links


Entrez 67465
MGI 1914715
Ensembl ENSMUSG00000002129
Vega OTTMUSG00000005059
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019214
(v2.0)
Sf3a1NM_02617567465
12.336639.832630.318120.136417.367719.936310.601440.962115.057417.8458
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018673
(v1.0)
Sf3a167465
Maternal RNA0.94943
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019214
(v2.0)
Sf3a167465
748/4850.112469/485-0.1642174/4852.0948529/4851.451828/485-2.0184242/485-1.5963
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019214
(v2.0)
Sf3a167465
387/2240.2749202/224-0.264153/2242.9844461/2242.35962/224-4.191264/224-2.3794
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019214
(v2.0)
Sf3a167465
46.59458157.52
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019214
(v2.0)
Sf3a167465
14.04334729.88
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018673
(v1.0)
Sf3a1NM_02617567465
41.422420.949214.983512.01647.28225
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018673
(v1.0)
Sf3a1FR173400,FR202798,FR205196,NM_02617567465
483.664227.596166.784144.85675.903
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018673
(v1.0)
Sf3a1NM_02617567465
43.31094.5116322.856
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018673
(v1.0)
Sf3a1NM_02617567465
42.275720.738830.3311
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018673
(v1.0)
Sf3a1FR173400,FR202798,FR205196,NM_02617567465
289.131567.229
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018673
(v1.0)
Sf3a1NM_02617567465
43.3364.4498433.2661
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018673
(v1.0)
Sf3a1NM_02617567465
13.872411.602310.4543
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018673
(v1.0)
Sf3a1FR173400,FR202798,FR205196,NM_02617567465
157.984164.818
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018673
(v1.0)
Sf3a1NM_02617567465
72.11794.87133
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018673
(v1.0)
Sf3a1NM_02617567465
9.7068915.163
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018673
(v1.0)
4502C0938A03-3Mm.257321200014H24Rik67465
U012268NAP001118-0011200014H24Rik;TC853668Q9DBT2U,F,23.90733.79493.55743.4673.74583.56963.7132
0018673
(v1.0)
16505K0424D06-3Mm.257321200014H24Rik67465
U012268NAP001118-0011200014H24Rik;TC853668,TC809503Q9DBT2U,F,23.34613.47963.78533.64273.48613.55483.425
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018673
(v1.0)
1419087_s_atMm.156914Sf3a1NM_026175.567465
0125.625000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018673
(v1.0)
A_51_P504442Sf3a1NM_02617567465
11P0.5950.146P
0018673
(v1.0)
A_52_P569178Sf3a1AK03011567465
11P0.6070.126P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018673
(v1.0)
Sf3a167465
130130