DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0018673

Gene

Sf3a1

Synonyms

Description

splicing factor 3a, subunit 1

Locus

NM_026175 UCSC: chr11:4060357-4082544(+) OLP: chr11:4060357-4082544(+)

DB links

Entrez 67465
MGI 1914715
Ensembl ENSMUSG00000002129
Vega OTTMUSG00000005059

Feature

protein-coding

GO_BP

4 Terms

GO_MF

1 Terms

GO_CC

4 Terms

KEGG

1 Terms

see DBTMEE:2019214 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0018673 (v1.0)	Sf3a1	NM_026175	67465	41.4224	20.9492	14.9835	12.0164	7.28225

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0018673 (v1.0)	Sf3a1	NM_026175	67465	43.3109	4.51163	22.856

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0018673 (v1.0)	Sf3a1	NM_026175	67465	42.2757	20.7388	30.3311

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0018673 (v1.0)	Sf3a1	NM_026175	67465	43.336	4.44984	33.2661

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0018673 (v1.0)	Sf3a1	NM_026175	67465	13.8724	11.6023	10.4543

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0018673 (v1.0)	Sf3a1	NM_026175	67465	72.1179	4.87133

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0018673 (v1.0)	Sf3a1	NM_026175	67465	9.70689	15.163

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0018673 (v1.0)	4502	C0938A03-3	Mm.25732	1200014H24Rik	67465	U012268	NAP001118-001	1200014H24Rik;	TC853668	Q9DBT2	U,F,2	3.9073	3.7949	3.5574	3.467	3.7458	3.5696	3.7132
0018673 (v1.0)	16505	K0424D06-3	Mm.25732	1200014H24Rik	67465	U012268	NAP001118-001	1200014H24Rik;	TC853668,TC809503	Q9DBT2	U,F,2	3.3461	3.4796	3.7853	3.6427	3.4861	3.5548	3.425

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0018673 (v1.0)	1419087_s_at	Mm.156914	Sf3a1	NM_026175.5	67465	0	125.625	0	0	0

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0018673 (v1.0)	A_51_P504442	Sf3a1	NM_026175	67465	1	1	P	0.595	0.146	P
0018673 (v1.0)	A_52_P569178	Sf3a1	AK030115	67465	1	1	P	0.607	0.126	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0018673 (v1.0)	Sf3a1	67465	1	3	0	1	3	0