DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018676
GeneSf3b1
SynonymsPrp10
SAP155
SF3b155
Targ4
Desc.splicing factor 3b, subunit 1
LocusNM_031179 chr1:55042013-55084322(-)
DB links


Entrez 81898
MGI 1932339
Ensembl ENSMUSG00000025982
Featureprotein-coding
GO(BP)
  •   3 Terms
      RNA splicing, via transesterification reactions (GO:0000375)
      mRNA splicing, via spliceosome (GO:0000398)
      anterior/posterior pattern specification (GO:0009952)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019217
(v2.0)
Sf3b1NM_03117981898
20.465989.2759160.392147.654220.81667.128452.347101.483209.37163.9604
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018676
(v1.0)
Sf3b181898
MGA0.99675
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019217
(v2.0)
Sf3b181898
641/3640.3028441/3640.1602609/3644.29861872/3643.684714/364-2.5595132/364-2.0502
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019217
(v2.0)
Sf3b181898
356/1600.6378247/1600.5076577/1605.34861700/1604.7193/160-3.301240/160-2.5547
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019217
(v2.0)
Sf3b181898
48.904813835.44
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019217
(v2.0)
Sf3b181898
22.492310920.64
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018676
(v1.0)
Sf3b1NM_03117981898
92.7795110.892109.962153.17837.0202
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018676
(v1.0)
Sf3b1NM_03117981898
681.234539.146710.4511055.99264.53
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018676
(v1.0)
Sf3b1NM_03117981898
97.00947.4846120.986
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018676
(v1.0)
Sf3b1NM_03117981898
94.6908109.77975.2587
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018676
(v1.0)
Sf3b1NM_03117981898
1077.55678.195
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018676
(v1.0)
Sf3b1NM_03117981898
97.06587.3820982.5412
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018676
(v1.0)
Sf3b1NM_03117981898
101.808147.9144.732
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018676
(v1.0)
Sf3b1NM_03117981898
1582.131509.53
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018676
(v1.0)
Sf3b1NM_03117981898
61.44123.4655
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018676
(v1.0)
Sf3b1NM_03117981898
62.7265.4993
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018676
(v1.0)
6162H3019C08-5Sf3b181898
U021335NAP080981-1Sf3b1;TC881625,TC819374,TC816777Q99NB9U,F,23.64033.52233.68573.67723.09543.36963.1608
0018676
(v1.0)
17246K0545F04-3Mm.28150Sf3b181898
U021335NAP031522-1Sf3b1;TC819377,TC819374Q99NB9U,F,22.0282.00692.31941.89812.11272.09192.1386
0018676
(v1.0)
19534L0278B02-3Mm.28150Sf3b181898
U021335NAP092929-001Sf3b1;TC819376,TC819374Q99NB9U,F,24.60564.57134.25954.48153.93054.31044.0799
0018676
(v1.0)
21504L0857D03-3Mm.28150Sf3b181898
U021335NAP092929-001Sf3b1;TC881625,TC819374Q99NB9U,F,23.09182.93071.98372.34952.64792.5072.3109
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018676
(v1.0)
1418561_atMm.279736Sf3b1NM_031179.281898
81.15139.77545.15032.85
0018676
(v1.0)
1440818_s_atMm.279736Sf3b1NM_031179.281898
1291.92354.71292.73575.51951.275
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018676
(v1.0)
A_52_P625808Sf3b1NM_03117981898
11P1.5590.152P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018676
(v1.0)
Sf3b181898
31103160