DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018717
GeneSgms1
SynonymsSMS1
SMS1alpha1
SMS1alpha2
SMS1beta
SMS1gamma
Tmem23
Desc.sphingomyelin synthase 1
LocusNM_144792 chr19:32197217-32462944(-)
NM_001168526 chr19:32197217-32285503(-)
NM_001168525 chr19:32197217-32423806(-)
DB links


Entrez 208449
MGI 2444110
Ensembl ENSMUSG00000040451
Vega OTTMUSG00000033408
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019257
(v2.0)
Sgms1NM_001168525,NM_001168526,NM_144792208449
134.1826.253835.839315.66025.1758310.50528.9692938.49417.8792811.0088
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018717
(v1.0)
Sgms1208449
Minor ZGA0.95714
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019257
(v2.0)
Sgms1208449
577/419-0.0511432/419-0.071911/419-1.56627/419-2.580879/419-0.3454529/419-0.2623
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019257
(v2.0)
Sgms1208449
251/1590.145172/159-0.00285/159-1.2338/159-2.834327/159-0.485180/159-0.4173
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019257
(v2.0)
Sgms1208449
45.66467858.54
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019257
(v2.0)
Sgms1208449
17.59544836.66
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018717
(v1.0)
Sgms1NM_001168525,NM_001168526,NM_144792208449
27.285224.766911.66553.58376.2993
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018717
(v1.0)
Sgms1FR213718,NM_001168525,NM_001168526,NM_144792208449
219.659177.51570.734124.428832.8598
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018717
(v1.0)
Sgms1NM_001168525,NM_001168526,NM_144792208449
28.529249.069327.0213
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018717
(v1.0)
Sgms1NM_001168525,NM_001168526,NM_144792208449
27.847324.518228.5082
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018717
(v1.0)
Sgms1FR213718,NM_001168525,NM_001168526,NM_144792208449
49.810261.5339
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018717
(v1.0)
Sgms1NM_001168525,NM_001168526,NM_144792208449
28.545748.397231.2668
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018717
(v1.0)
Sgms1NM_001168525,NM_001168526,NM_144792208449
10.80043.46025.4542
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018717
(v1.0)
Sgms1FR213718,NM_001168525,NM_001168526,NM_144792208449
17.970822.2848
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018717
(v1.0)
Sgms1NM_001168525,NM_001168526,NM_144792208449
11.78784.00573
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018717
(v1.0)
Sgms1NM_001168525,NM_001168526,NM_144792208449
1.710465.91812
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018717
(v1.0)
1426575_atMm.329810Sgms1NM_001168525.1,NM_144792.4,NM_001168526.1208449
0124.3159.32500
0018717
(v1.0)
1436499_atMm.329810Sgms1NM_001168525.1,NM_144792.4,NM_001168526.1208449
506.3719.9162.250793.25
0018717
(v1.0)
1442079_atMm.329810Sgms1NM_001168525.1,NM_144792.4,NM_001168526.1208449
343.45423.9000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018717
(v1.0)
A_51_P421958Tmem23NM_144792208449
11P0.8530.357P
0018717
(v1.0)
A_52_P371154Tmem23NM_144792208449
11P1.0560.71P
Proteome N/A