DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018782
GeneShfm1
SynonymsDSS1
Shfdg1
Shfg
Desc.split hand/foot malformation (ectrodactyly) type 1
LocusNM_009169 chr6:6508275-6528658(-)
DB links


Entrez 20422
MGI 109238
Ensembl ENSMUSG00000042541
Vega OTTMUSG00000024492
Featureprotein-coding
GO(BP)
  •   2 Terms
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019322
(v2.0)
Shfm1NM_00916920422
260.05125.747711.384993.7165264.61381.1409126.58111.3617251.34375.8904
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018782
(v1.0)
Shfm120422
MGA0.98613
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019322
(v2.0)
Shfm120422
639/3730.2632512/3730.34132/3732.0671409/3731.458107/3730.2536581/3730.0399
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019322
(v2.0)
Shfm120422
301/1330.6615216/1330.5798128/1333.431377/1332.811227/133-0.2346163/133-0.3034
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019322
(v2.0)
Shfm120422
56.137611150.57
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019322
(v2.0)
Shfm120422
18.49317026.42
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018782
(v1.0)
Shfm1NM_00916920422
26.74977.8232769.8416184.34390.8357
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018782
(v1.0)
Shfm1NM_00916920422
33.23269.7953781.7238218.928107.761
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018782
(v1.0)
Shfm1NM_00916920422
27.969395.10348.53536
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018782
(v1.0)
Shfm1NM_00916920422
27.30087.744728.44828
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018782
(v1.0)
Shfm1NM_00916920422
9.94819.85917
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018782
(v1.0)
Shfm1NM_00916920422
27.985593.80099.26579
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018782
(v1.0)
Shfm1NM_00916920422
64.6624177.991173.534
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018782
(v1.0)
Shfm1NM_00916920422
216.552214.587
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018782
(v1.0)
Shfm1NM_00916920422
11.502563.0399
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018782
(v1.0)
Shfm1NM_00916920422
24.66860.0838
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018782
(v1.0)
1418574_a_atMm.2469Shfm1NM_009169.220422
723.85100.95301.251510.0751237
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018782
(v1.0)
A_51_P180032Shfdg1NM_00916920422
11P1.0470.728P
Proteome N/A