DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018793
GeneShmt2
Synonyms
Desc.serine hydroxymethyltransferase 2 (mitochondrial)
LocusNM_028230 chr10:126954179-126959500(-)
NM_001252316 chr10:126954179-126959500(-)
DB links


Entrez 108037
MGI 1277989
Ensembl ENSMUSG00000025403
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019333
(v2.0)
Shmt2NM_001252316,NM_028230108037
62.032417.410629.35136.680415.7324108.59239.664538.42585.4831486.4416
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018793
(v1.0)
Shmt2108037
Minor ZGA0.99484
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019333
(v2.0)
Shmt2108037
837/5410.1166419/541-0.4838305/5412.747934/5412.1139419/5411.68151892/5411.2054
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019333
(v2.0)
Shmt2108037
261/222-0.2779121/222-0.985455/2221.5372173/2220.963681/2220.5941418/2220.3123
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019333
(v2.0)
Shmt2108037
143.598426753.78
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019333
(v2.0)
Shmt2108037
39.75258049.69
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018793
(v1.0)
Shmt2NM_028230108037
18.236620.47725.007044.0107628.7384
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018793
(v1.0)
Shmt2NM_028230108037
89.316390.180524.052119.1824168.388
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018793
(v1.0)
Shmt2NM_028230108037
19.068122.843122.3411
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018793
(v1.0)
Shmt2NM_028230108037
18.612320.271628.6932
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018793
(v1.0)
Shmt2NM_028230108037
89.9506158.683
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018793
(v1.0)
Shmt2NM_028230108037
19.079122.530231.4697
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018793
(v1.0)
Shmt2NM_028230108037
4.635743.872543.81489
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018793
(v1.0)
Shmt2NM_028230108037
30.879423.1603
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018793
(v1.0)
Shmt2NM_028230108037
10.22152.82569
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018793
(v1.0)
Shmt2NM_028230108037
27.56621.608
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018793
(v1.0)
1455084_x_atMm.29890Shmt2NM_028230.3108037
189.075300.35155.82580.6190.95
0018793
(v1.0)
1434204_x_atMm.29890Shmt2NM_028230.3108037
0029.72500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018793
(v1.0)
A_51_P313761Shmt2NM_028230108037
11P2.3540.0756P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018793
(v1.0)
Shmt2108037
121121