DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018817
GeneSigmar1
SynonymsmSigmaR1
Oprs1
Desc.sigma non-opioid intracellular receptor 1
LocusNM_011014 chr4:41685369-41688186(-)
DB links


Entrez 18391
MGI 1195268
Ensembl ENSMUSG00000036078
Vega OTTMUSG00000006675
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019357
(v2.0)
Sigmar1NM_001286538,NM_001286539,NM_001286540,NM_001286541,NM_001286542,NM_001286551,NM_001286605,NM_01101418391
28.977914.296714.8714.85419.5760722.478524.116116.6546.8509426.2648
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018817
(v1.0)
Sigmar118391
Maternal RNA0.95137
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019357
(v2.0)
Sigmar118391
650/4390.0533384/439-0.308598/4391.413223/4390.3523101/439-0.0615644/439-0.0464
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019357
(v2.0)
Sigmar118391
333/2000.2217160/200-0.435687/2002.3317170/2001.087230/200-0.6616197/200-0.6173
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019357
(v2.0)
Sigmar118391
52.400811844.41
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019357
(v2.0)
Sigmar118391
19.02458322.92
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018817
(v1.0)
Sigmar1NM_01101418391
14.701810.168410.04675.9099115.1256
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018817
(v1.0)
Sigmar1NM_01101418391
26.313218.198113.6516.7953119.9314
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018817
(v1.0)
Sigmar1NM_01101418391
15.37210.140711.0939
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018817
(v1.0)
Sigmar1NM_01101418391
15.004610.066312.0558
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018817
(v1.0)
Sigmar1NM_01101418391
17.159722.1277
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018817
(v1.0)
Sigmar1NM_01101418391
15.38110.001813.2224
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018817
(v1.0)
Sigmar1NM_01101418391
9.301645.706254.39095
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018817
(v1.0)
Sigmar1NM_01101418391
6.722085.16532
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018817
(v1.0)
Sigmar1NM_01101418391
30.01912.86466
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018817
(v1.0)
Sigmar1NM_01101418391
1.1310.778084
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018817
(v1.0)
319C0100E10-3Mm.22745Oprs118391
U024979NAP005573-001Oprs1;TC831120,TC831120O552423.29213.23413.22883.28333.28743.2743.266
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018817
(v1.0)
1416750_atMm.425181Sigmar1NM_011014.218391
92.1098.025077
0018817
(v1.0)
1451956_a_atMm.425181Sigmar1NM_011014.218391
051.25000
Agilent44K N/A
Proteome N/A