DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018825
GeneSin3a
SynonymsmSin3A
Sin3
Desc.transcriptional regulator, SIN3A (yeast)
LocusNM_001110351 chr9:56919847-56976175(+)
NM_001110350 chr9:56924183-56976175(+)
NM_011378 chr9:56924183-56976175(+)
DB links


Entrez 20466
MGI 107157
Ensembl ENSMUSG00000042557
Vega OTTMUSG00000036738
Featureprotein-coding
GO(BP)
  •   21 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      in utero embryonic development (GO:0001701)
      activation of innate immune response (GO:0002218)
      positive regulation of defense response to virus by host (GO:0002230)
      DNA replication (GO:0006260)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      protein deacetylation (GO:0006476)
      aging (GO:0007568)
      response to organic nitrogen (GO:0010243)
      positive regulation of chromatin silencing (GO:0031937)
      cellular protein localization (GO:0034613)
      negative regulation of apoptotic process (GO:0043066)
      regulation of transcription from RNA polymerase II promoter in response to oxidative stress (GO:0043619)
      negative regulation of transcription, DNA-dependent (GO:0045892)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      interphase of mitotic cell cycle (GO:0051329)
      response to methylglyoxal (GO:0051595)
      cellular response to glucose stimulus (GO:0071333)
      negative regulation of protein localization to nucleus (GO:1900181)
      negative regulation of transcription regulatory region DNA binding (GO:2000678)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019366
(v2.0)
Sin3aNM_001110350,NM_001110351,NM_01137820466
9.86317139.371276.19281.769138.193614.353516.1321220.41830.743815.2665
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018825
(v1.0)
Sin3a20466
Minor ZGA0.99128
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019366
(v2.0)
Sin3a20466
875/4390.4813551/4390.2112435/4393.55181482/4393.0793227/4391.0991166/4390.8085
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019366
(v2.0)
Sin3a20466
333/1630.5152212/1630.2615184/1633.6801613/1633.222563/1630.6727328/1630.4073
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019366
(v2.0)
Sin3a20466
22.71192768.23
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019366
(v2.0)
Sin3a20466
5.4281453.74
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018825
(v1.0)
Sin3aNM_001110350,NM_001110351,NM_01137820466
144.903190.66660.83626.433511.2829
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018825
(v1.0)
Sin3aFR296672,NM_001110350,NM_001110351,NM_01137820466
309.627359.875102.50573.648324.326
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018825
(v1.0)
Sin3aNM_001110350,NM_001110351,NM_01137820466
151.5093.60559208.021
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018825
(v1.0)
Sin3aNM_001110350,NM_001110351,NM_01137820466
147.888188.752163.219
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018825
(v1.0)
Sin3aFR296672,NM_001110350,NM_001110351,NM_01137820466
530.242324.836
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018825
(v1.0)
Sin3aNM_001110350,NM_001110351,NM_01137820466
151.5973.55621179.013
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018825
(v1.0)
Sin3aNM_001110350,NM_001110351,NM_01137820466
56.324625.522621.3242
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018825
(v1.0)
Sin3aFR296672,NM_001110350,NM_001110351,NM_01137820466
72.84971.0885
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018825
(v1.0)
Sin3aNM_001110350,NM_001110351,NM_01137820466
151.78658.9527
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018825
(v1.0)
Sin3aNM_001110350,NM_001110351,NM_01137820466
45.110557.296
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018825
(v1.0)
7834H3054G05-3Mm.15755Sin3a20466
U010537NAP097181-001Sin3a;TC794400,TC794397Q60520U,F,23.91793.8123.543.5812.77032.95452.8089
0018825
(v1.0)
9792H3086E04-3Sin3a20466
U010537NAP079566-1Sin3a;TC794398,TC794397Q60520U,F,23.55613.46153.10053.02512.63572.79942.7039
0018825
(v1.0)
16901K0515H06-3Mm.15755Sin3a20466
U010537NAP097180-001Sin3a;TC794397Q60520U,F,23.92224.09043.61133.57373.30383.41823.3057
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018825
(v1.0)
1419101_atMm.15755Sin3aNM_011378.2,NM_001110350.1,NM_001110351.120466
393.15889.475355.875111.62571.25
0018825
(v1.0)
1419900_atMm.15755Sin3aNM_011378.2,NM_001110350.1,NM_001110351.120466
061.875000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018825
(v1.0)
A_51_P159415Sin3aNM_01137820466
11P2.0570.0878P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018825
(v1.0)
Sin3a20466
04.5004.50