DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018844
GeneSiva1
SynonymsCD27bp
Desc.SIVA1, apoptosis-inducing factor
LocusNM_013929 chr12:113883039-113887363(+)
NM_001161737 chr12:113883039-113887363(+)
DB links


Entrez 30954
MGI 1353606
Ensembl ENSMUSG00000064326
Featureprotein-coding
GO(BP)
  •   5 Terms
      apoptotic process (GO:0006915)
      induction of apoptosis (GO:0006917)
      activation-induced cell death of T cells (GO:0006924)
      activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c (GO:0008635)
      negative regulation of NF-kappaB transcription factor activity (GO:0032088)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019384
(v2.0)
Siva1NM_001161737,NM_01392930954
20.5742100.336322.494112.69287.5799173.40324.6293314.4887.4511210.069
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018844
(v1.0)
Siva130954
1-Cell Transient0.9676
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019384
(v2.0)
Siva130954
766/563-0.0685421/563-0.5344620/5633.71181687/5632.90928/563-2.2319287/563-1.5664
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019384
(v2.0)
Siva130954
360/2110.2568205/211-0.157570/2114.95661462/2114.107813/211-1.8841111/211-1.5133
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019384
(v2.0)
Siva130954
101.999120948.8
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019384
(v2.0)
Siva130954
21.962212417.71
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018844
(v1.0)
Siva1NM_001161737,NM_01392930954
104.325225.35383.898660.602117.4837
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018844
(v1.0)
Siva1NM_001161737,NM_01392930954
80.4979185.05463.002343.039318.3126
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018844
(v1.0)
Siva1NM_001161737,NM_01392930954
109.0827.52269245.865
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018844
(v1.0)
Siva1NM_001161737,NM_01392930954
106.475223.091229.058
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018844
(v1.0)
Siva1NM_001161737,NM_01392930954
265.252271.346
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018844
(v1.0)
Siva1NM_001161737,NM_01392930954
109.1457.41966251.223
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018844
(v1.0)
Siva1NM_001161737,NM_01392930954
77.677158.513860.7631
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018844
(v1.0)
Siva1NM_001161737,NM_01392930954
41.708138.3326
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018844
(v1.0)
Siva1NM_001161737,NM_01392930954
65.595976.4341
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018844
(v1.0)
Siva1NM_001161737,NM_01392930954
442.044479.852
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018844
(v1.0)
2880C0451G08-3Mm.28216Siva-pending30954
U014452NAP026301-1Siva;TC926417,TC904694,TC904693,TC904692,TC904691,TC904690,TC904689,TC904688O54926U,F,24.67834.65234.02084.27474.17344.12044.3311
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018844
(v1.0)
1418377_a_atMm.289812Siva1NM_013929.2,NM_001161737.130954
127.45330.45395.2250108.975
0018844
(v1.0)
1452020_a_atMm.289812Siva1NM_013929.2,NM_001161737.130954
1814.4753325.33619.8951.21370.025
0018844
(v1.0)
1433680_x_atMm.289812Siva1NM_013929.2,NM_001161737.130954
250.825330.975355.575257.075185.9
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018844
(v1.0)
A_51_P138972MGI:1353606NM_01392930954
11P0.6540.147P
Proteome N/A