DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018875
GeneSkp1a
Synonymsp19Skp1
Tceb1l
Desc.S-phase kinase-associated protein 1A
LocusNM_011543 chr11:52045497-52060360(+)
DB links


Entrez 21402
MGI 103575
Ensembl ENSMUSG00000036309
Vega OTTMUSG00000005625
Featureprotein-coding
GO(BP)
  •   5 Terms
      ubiquitin-dependent protein catabolic process (GO:0006511)
      phosphorylation (GO:0016310)
      protein ubiquitination (GO:0016567)
      SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (GO:0031146)
      histone H2A monoubiquitination (GO:0035518)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019415
(v2.0)
Skp1aNM_01154321402
79.14271040.51000.41158.07210.4244.886156.861722.572209.994311.401
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018875
(v1.0)
Skp1a21402
Maternal RNA0.99975
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019415
(v2.0)
Skp1a21402
754/4290.3001485/4290.0607598/4294.04242299/4293.745456/429-0.8681455/429-0.513
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019415
(v2.0)
Skp1a21402
371/1820.5123203/1820.0411477/1824.9011497/1824.352519/182-1.1607113/182-1.2757
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019415
(v2.0)
Skp1a21402
64.433112949.95
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019415
(v2.0)
Skp1a21402
19.57857924.78
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018875
(v1.0)
Skp1aNM_01154321402
1080.83690.058117.53146.309111.246
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018875
(v1.0)
Skp1aNM_01154321402
900.538537.09290.0245115.31892.3468
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018875
(v1.0)
Skp1aNM_01154321402
1130.128.9433752.868
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018875
(v1.0)
Skp1aNM_01154321402
1103.09683.129534.833
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018875
(v1.0)
Skp1aNM_01154321402
545.458475.697
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018875
(v1.0)
Skp1aNM_01154321402
1130.7628.5469586.587
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018875
(v1.0)
Skp1aNM_01154321402
108.815141.267145.215
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018875
(v1.0)
Skp1aNM_01154321402
114.068116.697
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018875
(v1.0)
Skp1aNM_01154321402
444.86695.548
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018875
(v1.0)
Skp1aNM_01154321402
60.0627135.833
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018875
(v1.0)
2952C0456H12-3Mm.42944Tceb1l21402
U012582NAP093690-001Tceb1l;TC918710Q9WTX5U,F,24.72764.86013.94753.67593.92134.17894.277
0018875
(v1.0)
16069K0325G11-3Mm.42944Tceb1l21402
3.95664.1754.50914.16414.10184.42724.1598
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018875
(v1.0)
1423148_atMm.42944Skp1aNM_011543.421402
4079.153030.2751373.51201.31797.8
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018875
(v1.0)
A_52_P10458Skp1aNM_01154321402
11P0.4220.0735P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018875
(v1.0)
Skp1a21402
413634341562332541