DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019297
GeneSmad3
SynonymsMadh3
Smad 3
Desc.SMAD family member 3
LocusNM_016769 chr9:63494574-63605801(-)
DB links


Entrez 17127
MGI 1201674
Ensembl ENSMUSG00000032402
Vega OTTMUSG00000021500
Featureprotein-coding
GO(BP)
  •   72 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      skeletal system development (GO:0001501)
      osteoblast differentiation (GO:0001649)
      response to hypoxia (GO:0001666)
      in utero embryonic development (GO:0001701)
      mesoderm formation (GO:0001707)
      somitogenesis (GO:0001756)
      liver development (GO:0001889)
      negative regulation of protein phosphorylation (GO:0001933)
      heart looping (GO:0001947)
      osteoblast development (GO:0002076)
      immune system development (GO:0002520)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      transcription from RNA polymerase II promoter (GO:0006366)
      transport (GO:0006810)
      induction of apoptosis (GO:0006917)
      activation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0006919)
      immune response (GO:0006955)
      cell cycle arrest (GO:0007050)
      transforming growth factor beta receptor signaling pathway (GO:0007179)
      SMAD protein complex assembly (GO:0007183)
      gastrulation (GO:0007369)
      endoderm development (GO:0007492)
      negative regulation of cell proliferation (GO:0008285)
      embryonic pattern specification (GO:0009880)
      positive regulation of alkaline phosphatase activity (GO:0010694)
      positive regulation of epithelial to mesenchymal transition (GO:0010718)
      regulation of striated muscle tissue development (GO:0016202)
      regulation of transforming growth factor beta receptor signaling pathway (GO:0017015)
      evasion or tolerance of host defenses by virus (GO:0019049)
      signal transduction involved in regulation of gene expression (GO:0023019)
      negative regulation of cell growth (GO:0030308)
      positive regulation of cell migration (GO:0030335)
      positive regulation of bone mineralization (GO:0030501)
      thyroid gland development (GO:0030878)
      positive regulation of chondrocyte differentiation (GO:0032332)
      positive regulation of interleukin-1 beta production (GO:0032731)
      regulation of transforming growth factor beta2 production (GO:0032909)
      positive regulation of transforming growth factor beta3 production (GO:0032916)
      activin receptor signaling pathway (GO:0032924)
      negative regulation of osteoblast proliferation (GO:0033689)
      positive regulation of catenin import into nucleus (GO:0035413)
      nodal signaling pathway (GO:0038092)
      T cell activation (GO:0042110)
      negative regulation of protein catabolic process (GO:0042177)
      positive regulation of transcription factor import into nucleus (GO:0042993)
      negative regulation of apoptotic process (GO:0043066)
      cell-cell junction organization (GO:0045216)
      negative regulation of osteoblast differentiation (GO:0045668)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      negative regulation of mitotic cell cycle (GO:0045930)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      paraxial mesoderm morphogenesis (GO:0048340)
      developmental growth (GO:0048589)
      embryonic foregut morphogenesis (GO:0048617)
      embryonic cranial skeleton morphogenesis (GO:0048701)
      regulation of epithelial cell proliferation (GO:0050678)
      negative regulation of inflammatory response (GO:0050728)
      regulation of immune response (GO:0050776)
      protein stabilization (GO:0050821)
      positive regulation of positive chemotaxis (GO:0050927)
      regulation of binding (GO:0051098)
      positive regulation of stress fiber assembly (GO:0051496)
      positive regulation of focal adhesion assembly (GO:0051894)
      pericardium development (GO:0060039)
      transdifferentiation (GO:0060290)
      negative regulation of wound healing (GO:0061045)
      lens fiber cell differentiation (GO:0070306)
      positive regulation of canonical Wnt receptor signaling pathway (GO:0090263)
      activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway (GO:0097296)
      positive regulation of gene expression involved in extracellular matrix organization (GO:1901313)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019855
(v2.0)
Smad3NM_01676917127
4.46919102.545101.71127.16176.657434.3889920.7626126.93110.56253.11705
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019297
(v1.0)
Smad317127
Maternal RNA0.98324
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019855
(v2.0)
Smad317127
984/5490.3285554/549-0.1029168/5491.8697594/5491.4408235/5490.82891422/5490.7726
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019855
(v2.0)
Smad317127
592/2100.979318/2100.4805144/2102.9857471/2102.4825172/2101.7498968/2101.6007
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019855
(v2.0)
Smad317127
78.007821735.95
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019855
(v2.0)
Smad317127
12.43571468.52
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019297
(v1.0)
Smad3NM_01676917127
106.62470.471120.22084.6272714.5591
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019297
(v1.0)
Smad3NM_01676917127
212.691104.39535.4966.9995332.3072
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019297
(v1.0)
Smad3NM_01676917127
111.4851.6344376.8855
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019297
(v1.0)
Smad3NM_01676917127
108.8269.763594.0312
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019297
(v1.0)
Smad3NM_01676917127
219.494353.238
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019297
(v1.0)
Smad3NM_01676917127
111.5491.61204103.13
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019297
(v1.0)
Smad3NM_01676917127
18.72134.467827.33316
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019297
(v1.0)
Smad3NM_01676917127
23.387539.2382
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019297
(v1.0)
Smad3NM_01676917127
48.853212.9851
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019297
(v1.0)
Smad3NM_01676917127
66.493252.911
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019297
(v1.0)
1454960_atMm.7320Smad3NM_016769.417127
2097.9753377.81158.875389.425428.85
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019297
(v1.0)
A_52_P352277Smad3NM_01676917127
11P0.9840.905P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019297
(v1.0)
Smad317127
011011