DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019313
GeneSmarcb1
SynonymsBaf47
Ini1
integrase interactor 1
Snf5
SNF5/INI1
Desc.SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
LocusNM_011418 chr10:75359514-75384359(-)
NM_001161853 chr10:75359514-75384359(-)
DB links


Entrez 20587
MGI 1328366
Ensembl ENSMUSG00000000902
Vega OTTMUSG00000031849
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019871
(v2.0)
Smarcb1NM_001161853,NM_01141820587
24.949141.85524.734225.246823.007420.851912.037332.847517.614822.083
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019313
(v1.0)
Smarcb120587
Maternal RNA0.97633
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019871
(v2.0)
Smarcb120587
762/535-0.0026460/535-0.3334174/5351.9565364/5350.772938/535-1.7314301/535-1.4246
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019871
(v2.0)
Smarcb120587
354/1950.3459183/195-0.2067166/1953.2903342/1952.127512/195-1.879697/195-1.5918
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019871
(v2.0)
Smarcb120587
93.611619548.01
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019871
(v2.0)
Smarcb120587
11.368710910.43
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019313
(v1.0)
Smarcb1NM_001161853,NM_01141820587
43.52517.096418.78115.93518.37014
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019313
(v1.0)
Smarcb1NM_001161853,NM_01141820587
61.248823.0471146.633117.71413.2804
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019313
(v1.0)
Smarcb1NM_001161853,NM_01141820587
45.50949.1226118.6526
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019313
(v1.0)
Smarcb1NM_001161853,NM_01141820587
44.421716.924824.4287
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019313
(v1.0)
Smarcb1NM_001161853,NM_01141820587
23.369829.4937
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019313
(v1.0)
Smarcb1NM_001161853,NM_01141820587
45.53588.9976726.7925
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019313
(v1.0)
Smarcb1NM_001161853,NM_01141820587
17.388315.38612.2532
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019313
(v1.0)
Smarcb1NM_001161853,NM_01141820587
140.517101.647
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019313
(v1.0)
Smarcb1NM_001161853,NM_01141820587
22.480917.4418
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019313
(v1.0)
Smarcb1NM_001161853,NM_01141820587
23.395418.9964
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019313
(v1.0)
3073C0508B07-3Mm.26116Smarcb120587
U031936NAP122069-001Smarcb1;TC886621,TC886620,TC827212Q9ESU03.67163.90423.51563.87763.47963.7723.7306
0019313
(v1.0)
11632H3120A03-5Smarcb120587
U031936NAP095646-001Smarcb1;TC886622,TC886620Q9ESU02.75712.90192.75432.69972.78142.83062.9124
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019313
(v1.0)
1416045_a_atMm.279751Smarcb1NM_011418.2,NM_001161853.120587
353.85245.15177.55217.5269.575
0019313
(v1.0)
1435856_x_atMm.279751Smarcb1NM_011418.2,NM_001161853.120587
115.52588.3568.35096.55
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019313
(v1.0)
A_51_P284898Smarcb1NM_01141820587
11P1.5570.141P
Proteome N/A