DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019315
GeneSmarcc2
Synonyms
Desc.SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
LocusNM_001114096 chr10:127896292-127927230(+)
NM_001114097 chr10:127896292-127927230(+)
NM_198160 chr10:127896292-127927230(+)
DB links


Entrez 68094
MGI 1915344
Ensembl ENSMUSG00000025369
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019873
(v2.0)
Smarcc2NM_001114096,NM_001114097,NM_19816068094
34.55326.7694810.92695.391956.057357.843732.806816.90314.588536.68212
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019315
(v1.0)
Smarcc268094
1-Cell Transient0.99569
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019873
(v2.0)
Smarcc268094
652/4360.0676387/436-0.2875100/4361.4515241/4360.473724/436-2.0803167/436-1.9741
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019873
(v2.0)
Smarcc268094
350/1730.5013178/173-0.074794/1732.6385225/1731.69611/173-1.826273/173-1.8228
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019873
(v2.0)
Smarcc268094
64.82915442.1
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019873
(v2.0)
Smarcc268094
18.027910317.5
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019315
(v1.0)
Smarcc2NM_001114096,NM_001114097,NM_19816068094
7.010777.550154.001744.1709223.0671
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019315
(v1.0)
Smarcc2NM_001114096,NM_001114097,NM_19816068094
273.182293.844161.743201.904942.059
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019315
(v1.0)
Smarcc2NM_001114096,NM_001114097,NM_19816068094
7.330412.63658.23738
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019315
(v1.0)
Smarcc2NM_001114096,NM_001114097,NM_19816068094
7.15527.4743412.5406
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019315
(v1.0)
Smarcc2NM_001114096,NM_001114097,NM_19816068094
357.862463.336
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019315
(v1.0)
Smarcc2NM_001114096,NM_001114097,NM_19816068094
7.3346612.463413.7541
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019315
(v1.0)
Smarcc2NM_001114096,NM_001114097,NM_19816068094
3.704984.027193.17141
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019315
(v1.0)
Smarcc2NM_001114096,NM_001114097,NM_19816068094
71.1102123.014
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019315
(v1.0)
Smarcc2NM_001114096,NM_001114097,NM_19816068094
16.847911.3705
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019315
(v1.0)
Smarcc2NM_001114096,NM_001114097,NM_19816068094
00.0342452
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019315
(v1.0)
4517C0939A12-3Mm.244495930405J04Rik68094
U012190NAP001305-001TC836567,TC8365633.77233.6313.72733.57834.46533.97024.2947
0019315
(v1.0)
20104L0521B05-3Mm.244495930405J04Rik68094
U012190NAP093416-001TC836566,TC8365633.47293.42533.06263.27423.30973.29283.2796
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019315
(v1.0)
1428382_atMm.417338Smarcc2NM_001114097.1,NM_001114096.1,NM_198160.268094
185.7215.65212.2275.275284.4
Agilent44K N/A
Proteome N/A