DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019317
GeneSmarcd2
SynonymsBaf60b
Desc.SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
LocusNM_001130187 chr11:106124485-106134286(-)
NM_031878 chr11:106124485-106128946(-)
DB links


Entrez 83796
MGI 1933621
Ensembl ENSMUSG00000078619
Vega OTTMUSG00000003421
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019875
(v2.0)
Smarcd2NM_001130187,NM_03187883796
30.1919100.95780.124775.423465.84239.092730.527367.556960.415333.6303
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019317
(v1.0)
Smarcd283796
Maternal RNA0.92361
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019875
(v2.0)
Smarcd283796
847/5060.23434/506-0.3369291/5062.7737763/5061.918620/506-2.5447219/506-1.8005
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019875
(v2.0)
Smarcd283796
420/1950.5916200/195-0.0793174/1953.3579391/1952.32023/195-3.5855/195-2.3935
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019875
(v2.0)
Smarcd283796
105.330713876.33
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019875
(v2.0)
Smarcd283796
49.39135491.47
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019317
(v1.0)
Smarcd2NM_001130187,NM_03187883796
104.9455.693456.217745.905321.4601
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019317
(v1.0)
Smarcd2NM_001130187,NM_03187883796
1128.21322.68378.647322.023178.234
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019317
(v1.0)
Smarcd2NM_001130187,NM_03187883796
109.72511.04260.7627
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019317
(v1.0)
Smarcd2NM_001130187,NM_03187883796
107.10255.134250.1348
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019317
(v1.0)
Smarcd2NM_001130187,NM_03187883796
460.955278.98
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019317
(v1.0)
Smarcd2NM_001130187,NM_03187883796
109.78810.890854.9861
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019317
(v1.0)
Smarcd2NM_001130187,NM_03187883796
52.048944.323441.8842
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019317
(v1.0)
Smarcd2NM_001130187,NM_03187883796
299.906340.177
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019317
(v1.0)
Smarcd2NM_001130187,NM_03187883796
14.111719.7163
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019317
(v1.0)
Smarcd2NM_001130187,NM_03187883796
28.394520.2097
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019317
(v1.0)
5460BE553367.1Mm.21772Smarcd283796
U033539NAP015994-001Smarcd2;TC930185,TC930184Q99JR8U,F,23.93954.09384.40714.18754.04134.17254.0471
0019317
(v1.0)
11553H3118F03-3Mm.21772Smarcd283796
U033539NAP015994-001Smarcd2;TC930185,TC930184Q99JR8U,F,24.29264.35763.88084.39954.21634.26994.01
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019317
(v1.0)
1448400_a_atMm.21772Smarcd2NM_001130187.1,NM_031878.283796
2812.8752236.752179.6251557.025994
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019317
(v1.0)
A_51_P184197Smarcd2NM_03187883796
11P1.0420.754P
Proteome N/A