DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019319
GeneSmarce1
SynonymsBAF57
Desc.SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
LocusNM_020618 chr11:99070362-99092331(-)
DB links


Entrez 57376
MGI 1927347
Ensembl ENSMUSG00000037935
Vega OTTMUSG00000006455
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019877
(v2.0)
Smarce1NM_02061857376
19.577419.577818.252825.226628.567231.948625.270615.705623.348637.0764
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019319
(v1.0)
Smarce157376
MGA0.96484
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019877
(v2.0)
Smarce157376
737/4030.3573510/4030.223128/4031.9149321/4030.998650/403-0.9393256/403-1.249
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019877
(v2.0)
Smarce157376
374/1900.4621246/1900.2552123/1902.8961310/1902.023215/190-1.543387/190-1.7089
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019877
(v2.0)
Smarce157376
62.392714144.25
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019877
(v2.0)
Smarce157376
14.49039016.1
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019319
(v1.0)
Smarce1NM_02061857376
20.347812.648718.776919.822317.7921
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019319
(v1.0)
Smarce1NM_02061857376
5.248584.874035.794195.898317.03083
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019319
(v1.0)
Smarce1NM_02061857376
21.27557.1596513.8
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019319
(v1.0)
Smarce1NM_02061857376
20.76712.521711.6372
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019319
(v1.0)
Smarce1NM_02061857376
4.949425.62868
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019319
(v1.0)
Smarce1NM_02061857376
21.28787.0615912.7633
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019319
(v1.0)
Smarce1NM_02061857376
17.384519.139216.1499
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019319
(v1.0)
Smarce1NM_02061857376
5.83474.20094
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019319
(v1.0)
Smarce1NM_02061857376
73.04123.2185
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019319
(v1.0)
Smarce1NM_02061857376
1.310887.04229
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019319
(v1.0)
1422675_atMm.389717Smarce157376
330.775137.1185.7387.7247.05
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019319
(v1.0)
A_51_P435891Smarce1NM_02061857376
11P1.3820.197P
0019319
(v1.0)
A_52_P182741Smarce1NM_02061857376
11P0.870.395P
Proteome N/A