DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019324
GeneSmc4
SynonymsSmc4l1
Desc.structural maintenance of chromosomes 4
LocusNM_133786 chr3:68808894-68838545(+)
DB links


Entrez 70099
MGI 1917349
Ensembl ENSMUSG00000034349
Vega OTTMUSG00000024475
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019883
(v2.0)
Smc4NM_13378670099
6.19605144.00737.786448.621679.134252.179957.828926.164381.826556.1826
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019324
(v1.0)
Smc470099
Maternal RNA0.94162
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019883
(v2.0)
Smc470099
767/4080.397558/4080.3348323/4083.22621046/4082.68231/408-1.6293166/408-1.8872
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019883
(v2.0)
Smc470099
456/1850.7854261/1850.3785309/1854.2542900/1853.59589/185-2.183869/185-1.9987
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019883
(v2.0)
Smc470099
62.239915939.14
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019883
(v2.0)
Smc470099
10.07331039.78
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019324
(v1.0)
Smc4NM_13378670099
149.57526.011136.154354.83840.6488
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019324
(v1.0)
Smc4NM_13378670099
402.98773.431675.159118.016101.111
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019324
(v1.0)
Smc4NM_13378670099
156.3942.2659628.3787
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019324
(v1.0)
Smc4NM_13378670099
152.65625.749919.4246
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019324
(v1.0)
Smc4NM_13378670099
196.026100.178
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019324
(v1.0)
Smc4NM_13378670099
156.4852.2349221.3043
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019324
(v1.0)
Smc4NM_13378670099
33.473352.948356.6158
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019324
(v1.0)
Smc4NM_13378670099
208.731210.945
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019324
(v1.0)
Smc4NM_13378670099
220.424108.775
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019324
(v1.0)
Smc4NM_13378670099
43.6389117.665
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019324
(v1.0)
1452197_atMm.206841Smc4NM_133786.370099
2673.4967.4251133.425868.35903.525
0019324
(v1.0)
1427275_atMm.206841Smc4NM_133786.370099
2300.8253539.4679.1502.825640.875
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019324
(v1.0)
A_51_P111210Smc4l1NM_13378670099
11P0.4390.0777P
0019324
(v1.0)
A_51_P143212Smc4l1AK04865070099
11P0.2020.0732P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019324
(v1.0)
Smc470099
040040