DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019325
GeneSmc5
SynonymsSmc5l1
Desc.structural maintenance of chromosomes 5
LocusNM_153808 chr19:23280931-23348387(-)
NM_001252684 chr19:23280931-23348387(-)
NM_001252685 chr19:23280931-23347089(-)
DB links


Entrez 226026
MGI 2385088
Ensembl ENSMUSG00000024943
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019884
(v2.0)
Smc5NM_001252684,NM_001252685,NM_153808226026
3.807367.279616.7685922.211643.290413.84328.02364.3882437.596411.7551
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019325
(v1.0)
Smc5226026
MGA0.9989
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019884
(v2.0)
Smc5226026
660/3510.3972460/3510.273388/3511.5724311/3511.151171/351-0.2446429/351-0.3089
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019884
(v2.0)
Smc5226026
332/1450.6786188/1450.256978/1452.609247/1452.080825/145-0.4625132/145-0.7283
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019884
(v2.0)
Smc5226026
58.8399065.38
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019884
(v2.0)
Smc5226026
17.20614637.4
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019325
(v1.0)
Smc5NM_153808226026
10.78126.7442626.605847.251626.9357
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019325
(v1.0)
Smc5FR189355,NM_153808226026
120.37960.0496291.758473.958315.905
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019325
(v1.0)
Smc5NM_153808226026
11.27282.268087.35813
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019325
(v1.0)
Smc5NM_153808226026
11.00336.676545.03949
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019325
(v1.0)
Smc5FR189355,NM_153808226026
93.151655.5857
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019325
(v1.0)
Smc5NM_153808226026
11.27932.237025.52714
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019325
(v1.0)
Smc5NM_153808226026
24.632845.623342.6688
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019325
(v1.0)
Smc5FR189355,NM_153808226026
103.47283.6194
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019325
(v1.0)
Smc5NM_153808226026
11.327712.0848
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019325
(v1.0)
Smc5NM_153808226026
0.6835540.94052
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019325
(v1.0)
18250L0072E01-3Mm.23267SMC5226026
U038917NAP094094-001SMC5;TC848877,TC848876,TC837915Q922K32.15282.56942.55693.22692.80562.99232.6685
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019325
(v1.0)
1426270_atMm.23267Smc5NM_153808.1226026
39.62559.8526181.15196.2
Agilent44K N/A
Proteome N/A