DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019326
GeneSmc6
SynonymsSmc6l1
Desc.structural maintenance of chromosomes 6
LocusNM_025695 chr12:11272692-11326591(+)
DB links


Entrez 67241
MGI 1914491
Ensembl ENSMUSG00000020608
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019885
(v2.0)
Smc6NM_02569567241
8.4402132.620178.479694.821268.30612.249319.565353.885169.499412.0657
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019326
(v1.0)
Smc667241
2-Cell Transient0.87342
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019885
(v2.0)
Smc667241
671/3440.45486/3440.3814182/3442.6405422/3441.61978/344-0.0821356/344-0.5479
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019885
(v2.0)
Smc667241
366/1370.9210/1370.4969179/1373.8724379/1372.776931/137-0.0834189/137-0.1341
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019885
(v2.0)
Smc667241
44.529612834.79
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019885
(v2.0)
Smc667241
10.01229111
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019326
(v1.0)
Smc6NM_02569567241
33.885254.086870.5247.270513.788
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019326
(v1.0)
Smc6NM_02569567241
269.97323.325437.318360.75694.5624
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019326
(v1.0)
Smc6NM_02569567241
35.43013.0866759.0098
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019326
(v1.0)
Smc6NM_02569567241
34.583353.543739.9069
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019326
(v1.0)
Smc6NM_02569567241
829.843661.495
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019326
(v1.0)
Smc6NM_02569567241
35.45073.0443943.7686
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019326
(v1.0)
Smc6NM_02569567241
65.290645.641548.1386
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019326
(v1.0)
Smc6FR391174,NM_02569567241
473.933522.362
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019326
(v1.0)
Smc6NM_02569567241
34.033674.5271
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019326
(v1.0)
Smc6NM_02569567241
31.019152.9366
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019326
(v1.0)
8986H3075A10-3Mm.2196342810489L22Rik67241
U013757NAP092431-0012810489L22Rik;TC864798Q9CV94U,F,24.22934.20373.44763.72913.50583.43143.5336
0019326
(v1.0)
14152J0416H06-3Mm.2196342810489L22Rik67241
2810489L22Rik3.58423.40663.04063.18953.64923.29313.6513
0019326
(v1.0)
14156J0417F04-3Mm.2196342810489L22Rik67241
U013757NAP092431-0012810489L22Rik;TC909946,TC909945Q9CV94U,F,23.41333.12432.79823.04963.10122.96173.1029
0019326
(v1.0)
14537J0703H03-3Mm.2196342810489L22Rik67241
2.47212.55242.56552.51562.44732.44962.3818
0019326
(v1.0)
15807K0246C09-3Mm.2196342810489L22Rik67241
U013757NAP092431-0012810489L22Rik;TC909946Q9CV94U,F,23.843.7922.9643.22422.99023.16663.1593
0019326
(v1.0)
19440L0273F01-3Mm.2196342810489L22Rik67241
U013757NAP092432-0012810489L22Rik;TC909945Q9CV94U,F,23.03983.02542.98583.37953.07012.96522.9806
0019326
(v1.0)
19932L0509B03-3Mm.2196342810489L22Rik67241
TC8647983.33483.30493.56493.35323.47523.47663.3933
0019326
(v1.0)
21947L0928A09-3Mm.2196342810489L22Rik67241
NAP033977-1TC8647982.42272.0672.63542.7783.06843.16373.2622
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019326
(v1.0)
1448828_atMm.173953Smc6NM_025695.467241
769.3751231.251399.825359.525340.775
0019326
(v1.0)
1422909_atMm.173953Smc6NM_025695.467241
31.27547.7592.025060.425
0019326
(v1.0)
1460069_atMm.173953Smc6NM_025695.467241
00051.6750
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019326
(v1.0)
A_51_P270274Smc6l1BC04879067241
11P1.0160.932P
0019326
(v1.0)
A_52_P139461Smc6l1NM_02569567241
11P0.9140.545P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019326
(v1.0)
Smc667241
010010