DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0019326

Gene

Smc6

Synonyms

Smc6l1

Description

structural maintenance of chromosomes 6

Locus

NM_025695 UCSC: chr12:11272692-11326591(+) OLP: chr12:11272692-11326591(+)

DB links

Entrez 67241
MGI 1914491
Ensembl ENSMUSG00000020608

Feature

protein-coding

GO_BP

5 Terms

GO_MF

2 Terms

GO_CC

6 Terms

KEGG

see DBTMEE:2019885 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0019326 (v1.0)	Smc6	NM_025695	67241	33.8852	54.0868	70.52	47.2705	13.788

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0019326 (v1.0)	Smc6	NM_025695	67241	35.4301	3.08667	59.0098

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0019326 (v1.0)	Smc6	NM_025695	67241	34.5833	53.5437	39.9069

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0019326 (v1.0)	Smc6	NM_025695	67241	35.4507	3.04439	43.7686

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0019326 (v1.0)	Smc6	NM_025695	67241	65.2906	45.6415	48.1386

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0019326 (v1.0)	Smc6	NM_025695	67241	34.0336	74.5271

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0019326 (v1.0)	Smc6	NM_025695	67241	31.0191	52.9366

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0019326 (v1.0)	8986	H3075A10-3	Mm.219634	2810489L22Rik	67241	U013757	NAP092431-001	2810489L22Rik;	TC864798	Q9CV94	U,F,2	4.2293	4.2037	3.4476	3.7291	3.5058	3.4314	3.5336
0019326 (v1.0)	14152	J0416H06-3	Mm.219634	2810489L22Rik	67241			2810489L22Rik				3.5842	3.4066	3.0406	3.1895	3.6492	3.2931	3.6513
0019326 (v1.0)	14156	J0417F04-3	Mm.219634	2810489L22Rik	67241	U013757	NAP092431-001	2810489L22Rik;	TC909946,TC909945	Q9CV94	U,F,2	3.4133	3.1243	2.7982	3.0496	3.1012	2.9617	3.1029
0019326 (v1.0)	14537	J0703H03-3	Mm.219634	2810489L22Rik	67241							2.4721	2.5524	2.5655	2.5156	2.4473	2.4496	2.3818
0019326 (v1.0)	15807	K0246C09-3	Mm.219634	2810489L22Rik	67241	U013757	NAP092431-001	2810489L22Rik;	TC909946	Q9CV94	U,F,2	3.84	3.792	2.964	3.2242	2.9902	3.1666	3.1593
0019326 (v1.0)	19440	L0273F01-3	Mm.219634	2810489L22Rik	67241	U013757	NAP092432-001	2810489L22Rik;	TC909945	Q9CV94	U,F,2	3.0398	3.0254	2.9858	3.3795	3.0701	2.9652	2.9806
0019326 (v1.0)	19932	L0509B03-3	Mm.219634	2810489L22Rik	67241				TC864798			3.3348	3.3049	3.5649	3.3532	3.4752	3.4766	3.3933
0019326 (v1.0)	21947	L0928A09-3	Mm.219634	2810489L22Rik	67241		NAP033977-1		TC864798			2.4227	2.067	2.6354	2.778	3.0684	3.1637	3.2622

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0019326 (v1.0)	1448828_at	Mm.173953	Smc6	NM_025695.4	67241	769.375	1231.25	1399.82	359.525	340.775
0019326 (v1.0)	1422909_at	Mm.173953	Smc6	NM_025695.4	67241	31.275	47.75	92.025	0	60.425
0019326 (v1.0)	1460069_at	Mm.173953	Smc6	NM_025695.4	67241	0	0	0	51.675	0

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0019326 (v1.0)	A_51_P270274	Smc6l1	BC048790	67241	1	1	P	1.016	0.932	P
0019326 (v1.0)	A_52_P139461	Smc6l1	NM_025695	67241	1	1	P	0.914	0.545	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0019326 (v1.0)	Smc6	67241	0	1	0	0	1	0