DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019331
GeneSmcr8
Synonyms
Desc.Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)
LocusNM_175491 chr11:60591027-60594569(+)
NM_001085440 chr11:60591027-60601789(+)
DB links


Entrez 237782
MGI 2444720
Ensembl ENSMUSG00000049323
Vega OTTMUSG00000007770
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019892
(v2.0)
Smcr8NM_001085440,NM_175491237782
7.145593.918887.9155220.61911.51625.0773824.68717.4995412.39524.3478
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019331
(v1.0)
Smcr8237782
2-Cell Transient0.983
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019892
(v2.0)
Smcr8237782
721/4930.0355433/493-0.3027177/4932.0963579/4931.558416/493-2.8123115/493-2.6833
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019892
(v2.0)
Smcr8237782
338/2130.1527183/213-0.3334147/2132.9959449/2132.39348/213-2.534936/213-3.1114
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019892
(v2.0)
Smcr8237782
83.395717049.06
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019892
(v2.0)
Smcr8237782
37.427512230.68
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019331
(v1.0)
Smcr8NM_001085440,NM_175491237782
4.072015.4847115.3447.9782117.2609
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019331
(v1.0)
Smcr8NM_001085440,NM_175491237782
4.869765.923217.14419.1331619.8233
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019331
(v1.0)
Smcr8NM_001085440,NM_175491237782
4.257662.613225.98393
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019331
(v1.0)
Smcr8NM_001085440,NM_175491237782
4.15595.429645.5628
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019331
(v1.0)
Smcr8NM_001085440,NM_175491237782
6.014546.23636
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019331
(v1.0)
Smcr8NM_001085440,NM_175491237782
4.260142.577426.10109
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019331
(v1.0)
Smcr8NM_001085440,NM_175491237782
14.20627.703288.52875
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019331
(v1.0)
Smcr8NM_001085440,NM_175491237782
9.034539.988
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019331
(v1.0)
Smcr8NM_001085440,NM_175491237782
2.8566423.6064
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019331
(v1.0)
Smcr8NM_001085440,NM_175491237782
0.83020.871751
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019331
(v1.0)
1437701_atMm.57726Smcr8NM_001085440.1,NM_175491.4237782
00304.77500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019331
(v1.0)
A_51_P405423Smcr8BC094221237782
11P1.3730.196P
Proteome N/A