DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019335
GeneSmg5
Synonyms
Desc.Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
LocusNM_178246 chr3:88140182-88166259(+)
DB links


Entrez 229512
MGI 2447364
Ensembl ENSMUSG00000001415
Featureprotein-coding
GO(BP)
  •   2 Terms
      nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:0000184)
      regulation of dephosphorylation (GO:0035303)
GO(MF)
  •   1 Terms
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019897
(v2.0)
Smg5NM_178246229512
18.02362.966157.215478.3318114.30743.607819.97276.95791101.22349.3746
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019335
(v1.0)
Smg5229512
MGA0.9677
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019897
(v2.0)
Smg5229512
680/4130.2061399/413-0.1655147/4132.0787514/4131.641120/4130.2722599/413-0.0628
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019897
(v2.0)
Smg5229512
284/1710.2179160/171-0.210898/1712.7137214/1711.640516/171-1.307392/171-1.4785
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019897
(v2.0)
Smg5229512
55.776317332.24
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019897
(v2.0)
Smg5229512
17.76128421.14
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019335
(v1.0)
Smg5NM_178246229512
3.083665.0151158.302779.19714.3033
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019335
(v1.0)
Smg5NM_178246229512
57.908673.4833960.0631279.49224.575
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019335
(v1.0)
Smg5NM_178246229512
3.224246.591415.4716
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019335
(v1.0)
Smg5NM_178246229512
3.147184.964765.15005
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019335
(v1.0)
Smg5NM_178246229512
103.04993.9889
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019335
(v1.0)
Smg5NM_178246229512
3.226126.501135.6484
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019335
(v1.0)
Smg5NM_178246229512
53.979276.467969.8387
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019335
(v1.0)
Smg5NM_178246229512
685.081649.038
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019335
(v1.0)
Smg5NM_178246229512
0.44293113.6379
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019335
(v1.0)
Smg5NM_178246229512
00.0763646
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019335
(v1.0)
1434546_atMm.439830Smg5NM_178246.3229512
00180.05296.15144.7
Agilent44K N/A
Proteome N/A