DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019336
GeneSmg6
Synonyms
Desc.Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
LocusNM_001002764 chr11:74739374-74977950(+)
DB links


Entrez 103677
MGI 2144117
Ensembl ENSMUSG00000038290
Vega OTTMUSG00000006198
Featureprotein-coding
GO(BP)
  •   2 Terms
      nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:0000184)
      telomere maintenance (GO:0000723)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019898
(v2.0)
Smg6NM_001002764103677
8.625817.567914.107523.184318.58857.550458.4879718.528820.6096.42954
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019336
(v1.0)
Smg6103677
2-Cell Transient0.96654
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019898
(v2.0)
Smg6103677
730/3740.451522/3740.364391/3743.62281311/3743.132313/374-2.6977116/374-2.2734
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019898
(v2.0)
Smg6103677
371/1500.7896254/1500.6402276/1504.3738813/1503.74738/150-2.040665/150-1.7821
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019898
(v2.0)
Smg6103677
65.845315741.94
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019898
(v2.0)
Smg6103677
6.9739957.34
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019336
(v1.0)
Smg6NM_001002764103677
18.26779.77717.251912.87455.90988
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019336
(v1.0)
Smg6FR297330,NM_001002764103677
174.00955.2195393.781366.39691.2525
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019336
(v1.0)
Smg6NM_001002764103677
19.10063.1545410.6669
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019336
(v1.0)
Smg6NM_001002764103677
18.64419.6788313.7275
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019336
(v1.0)
Smg6FR297330,NM_001002764103677
36.5392111.583
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019336
(v1.0)
Smg6NM_001002764103677
19.11173.1113415.0559
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019336
(v1.0)
Smg6NM_001002764103677
15.972612.430814.275
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019336
(v1.0)
Smg6FR297330,NM_001002764103677
229.217335.751
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019336
(v1.0)
Smg6NM_001002764103677
14.68345.553
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019336
(v1.0)
Smg6NM_001002764103677
2.750083.16612
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019336
(v1.0)
4584C0943A09-3Mm.27034AI317223103677
U033073NAP121602-001U,F3.12993.09913.02923.09513.16993.07493.1093
0019336
(v1.0)
10527H3098F12-3Mm.27034AI317223103677
U043193NAP118824-1TC927180,TC800383,TC800382U,F4.24524.21644.14784.05624.28864.17124.2961
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019336
(v1.0)
1433911_atMm.288460Smg6NM_001002764.1103677
0457.4000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019336
(v1.0)
A_51_P320434AI317223NM_001002764103677
11P1.2230.294P
0019336
(v1.0)
A_52_P142883AI317223NM_001002764103677
11P1.1310.435P
0019336
(v1.0)
A_52_P355276AI317223NM_001002764103677
11P0.6480.181P
0019336
(v1.0)
A_52_P628928AI317223NM_001002764103677
11P1.0750.671P
Proteome N/A