DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019337
GeneSmg7
Synonyms
Desc.Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
LocusNM_001160256 chr1:154684125-154749776(-)
NM_001160257 chr1:154684125-154725298(-)
NM_001005507 chr1:154684125-154749776(-)
DB links


Entrez 226517
MGI 2682334
Ensembl ENSMUSG00000042772
Featureprotein-coding
GO(BP)
  •   1 Terms
      nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:0000184)
GO(MF)
  •   1 Terms
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019899
(v2.0)
Smg7NM_001005507,NM_001160256,NM_001160257226517
27.173813.892914.331364.335562.806515.955717.567912.665750.710417.0629
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019337
(v1.0)
Smg7226517
Major ZGA0.99957
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019899
(v2.0)
Smg7226517
824/3490.725612/3490.6925818/3494.78242551/3494.191247/349-0.8214249/349-1.0818
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019899
(v2.0)
Smg7226517
497/1481.2293307/1480.9318717/1485.76581866/1484.9647/148-2.191759/148-1.8993
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019899
(v2.0)
Smg7226517
41.89134593.09
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019899
(v2.0)
Smg7226517
21.81262394.84
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019337
(v1.0)
Smg7NM_001005507,NM_001160256,NM_001160257226517
14.44659.8877547.871743.585712.4071
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019337
(v1.0)
Smg7NM_001005507,NM_001160256,NM_001160257226517
123.0564.6569314.959296.07798.0217
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019337
(v1.0)
Smg7NM_001005507,NM_001160256,NM_001160257226517
15.10529.9378810.7877
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019337
(v1.0)
Smg7NM_001005507,NM_001160256,NM_001160257226517
14.74419.788479.36317
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019337
(v1.0)
Smg7NM_001005507,NM_001160256,NM_001160257226517
103.282138.126
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019337
(v1.0)
Smg7NM_001005507,NM_001160256,NM_001160257226517
15.11399.8017610.2692
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019337
(v1.0)
Smg7NM_001005507,NM_001160256,NM_001160257226517
44.321742.083735.0977
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019337
(v1.0)
Smg7NM_001005507,NM_001160256,NM_001160257226517
290.923247.288
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019337
(v1.0)
Smg7NM_001005507,NM_001160256,NM_001160257226517
9.2320929.194
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019337
(v1.0)
Smg7NM_001005507,NM_001160256,NM_001160257226517
0.487061.6524
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019337
(v1.0)
1455574_atMm.270775Smg7NM_001160256.1,NM_001160257.1,NM_001005507.2226517
155.525156.0750792.4340.875
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019337
(v1.0)
A_52_P1840529430023P16RikNM_001005507226517
11P0.7650.373P
0019337
(v1.0)
A_52_P4870249430023P16RikNM_001005507226517
11P1.2480.298P
0019337
(v1.0)
A_52_P5892689430023P16RikNM_001005507226517
11P0.6410.265P
Proteome N/A