DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019361
GeneSmpd4
Synonymsneutral membrane (neutral sphingomyelinase-3)
Desc.sphingomyelin phosphodiesterase 4
LocusNM_001164609 chr16:17619447-17644923(+)
NM_001164610 chr16:17619447-17644923(+)
NM_029945 chr16:17619447-17644923(+)
NM_001164611 chr16:17619447-17644923(+)
DB links


Entrez 77626
MGI 1924876
Ensembl ENSMUSG00000005899
Vega OTTMUSG00000035764
Featureprotein-coding
GO(BP)
  •   4 Terms
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019937
(v2.0)
Smpd4NM_001164609,NM_001164610,NM_001164611,NM_02994577626
10.007416.079510.589738.273341.128117.93289.391989.3177331.317624.1551
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019361
(v1.0)
Smpd477626
Major ZGA0.98917
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019937
(v2.0)
Smpd477626
596/437-0.065429/437-0.142596/4371.39241/4370.470473/437-0.5179453/437-0.546
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019937
(v2.0)
Smpd477626
309/231-0.0927179/231-0.481789/2312.1673226/2311.290532/231-0.7753192/231-0.861
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019937
(v2.0)
Smpd477626
40.240511136.25
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019937
(v2.0)
Smpd477626
6.966759.29
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019361
(v1.0)
Smpd4NM_001164609,NM_001164610,NM_001164611,NM_02994577626
16.72157.3269228.481728.44476.67313
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019361
(v1.0)
Smpd4NM_001164609,NM_001164610,NM_001164611,NM_02994577626
599.909183.552939.2291109.9148.392
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019361
(v1.0)
Smpd4NM_001164609,NM_001164610,NM_001164611,NM_02994577626
17.48393.65987.99383
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019361
(v1.0)
Smpd4NM_001164609,NM_001164610,NM_001164611,NM_02994577626
17.0667.253366.91923
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019361
(v1.0)
Smpd4NM_001164609,NM_001164610,NM_001164611,NM_02994577626
183.653235.968
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019361
(v1.0)
Smpd4NM_001164609,NM_001164610,NM_001164611,NM_02994577626
17.4943.609687.58877
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019361
(v1.0)
Smpd4NM_001164609,NM_001164610,NM_001164611,NM_02994577626
26.369627.464521.6634
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019361
(v1.0)
Smpd4NM_001164609,NM_001164610,NM_001164611,NM_02994577626
392.856369.593
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019361
(v1.0)
Smpd4NM_001164609,NM_001164610,NM_001164611,NM_02994577626
3.899028.17286
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019361
(v1.0)
Smpd4NM_001164609,NM_001164610,NM_001164611,NM_02994577626
1.135770.436384
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019361
(v1.0)
2176C0298G08-3Mm.346594122402O22Rik77626
U016876NAP001751-0014122402O22Rik;TC809826P97351U,F,22.92732.85462.8583.14413.03412.98772.9256
0019361
(v1.0)
19362L0267A04-34122402O22Rik77626
U016876NAP001751-0014122402O22Rik;TC809826P97351U,F,23.02032.90913.38363.91843.43993.65743.5472
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019361
(v1.0)
1437024_atMm.34659Smpd4NM_029945.3,NM_001164609.1,NM_001164610.1,NM_001164611.177626
0068.451.47525.175
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019361
(v1.0)
A_51_P1598144122402O22RikNM_02994577626
11P0.3560.0658P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019361
(v1.0)
Smpd477626
001001